miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5382 3' -58.9 NC_001798.1 + 27182 0.88 0.042819
Target:  5'- --gGGGCCGCGGGCGCGGGGGGAGg- -3'
miRNA:   3'- uugUCUGGCGCCUGUGCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 27534 0.78 0.188375
Target:  5'- aGGCAGccCCGCGGcGCGCGGGGGGAGg- -3'
miRNA:   3'- -UUGUCu-GGCGCC-UGUGCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 6540 0.77 0.234407
Target:  5'- gGACGGGCCGgGGGgACGGGGGGAc-- -3'
miRNA:   3'- -UUGUCUGGCgCCUgUGCCUCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 6582 0.77 0.234407
Target:  5'- gGACGGGCCGgGGGgACGGGGGGAc-- -3'
miRNA:   3'- -UUGUCUGGCgCCUgUGCCUCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 129290 0.76 0.251733
Target:  5'- cGGCAGGCaccgCGCGGGCGCGGAGGaGGG-Cg -3'
miRNA:   3'- -UUGUCUG----GCGCCUGUGCCUCC-CUCaG- -5'
5382 3' -58.9 NC_001798.1 + 57546 0.75 0.282933
Target:  5'- gGGCGGAugcguuCCGCGGggACGCGGAGGGGG-Cg -3'
miRNA:   3'- -UUGUCU------GGCGCC--UGUGCCUCCCUCaG- -5'
5382 3' -58.9 NC_001798.1 + 61006 0.75 0.310039
Target:  5'- gGGCGGAUgaCGCGGAC-CGGAuGGGGGUUa -3'
miRNA:   3'- -UUGUCUG--GCGCCUGuGCCU-CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 22318 0.74 0.331636
Target:  5'- cAACGGGCCGCcgccacGGACGCGGAcgcgcGGGcGUCg -3'
miRNA:   3'- -UUGUCUGGCG------CCUGUGCCU-----CCCuCAG- -5'
5382 3' -58.9 NC_001798.1 + 6604 0.74 0.339077
Target:  5'- nACGGGCCGgGGGgACGGGGGGAc-- -3'
miRNA:   3'- uUGUCUGGCgCCUgUGCCUCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 6354 0.73 0.37004
Target:  5'- gGACGGGCCGgGGGgACGGgccGGGGGGcCg -3'
miRNA:   3'- -UUGUCUGGCgCCUgUGCC---UCCCUCaG- -5'
5382 3' -58.9 NC_001798.1 + 9657 0.73 0.377268
Target:  5'- cAGCGGGCCGCgcgcggaGGGCGCGGgauGGGGGGcUCu -3'
miRNA:   3'- -UUGUCUGGCG-------CCUGUGCC---UCCCUC-AG- -5'
5382 3' -58.9 NC_001798.1 + 39416 0.73 0.38541
Target:  5'- --gGGACCG-GGGCGCGGccguccgcgugcgGGGGGGUCa -3'
miRNA:   3'- uugUCUGGCgCCUGUGCC-------------UCCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 6263 0.73 0.411375
Target:  5'- gGACGGGCCGgGGGgACGGgccGGGGGGa- -3'
miRNA:   3'- -UUGUCUGGCgCCUgUGCC---UCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 6302 0.73 0.411375
Target:  5'- gGACGGGCCGgGGGgACGGgccGGGGGGa- -3'
miRNA:   3'- -UUGUCUGGCgCCUgUGCC---UCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 2566 0.72 0.41998
Target:  5'- gGGCGG-CCGCGGG-GCGGGGGGcGUCc -3'
miRNA:   3'- -UUGUCuGGCGCCUgUGCCUCCCuCAG- -5'
5382 3' -58.9 NC_001798.1 + 145810 0.72 0.43751
Target:  5'- cGGCAGAaaCGCGGGCGCGGcGGcGGUCg -3'
miRNA:   3'- -UUGUCUg-GCGCCUGUGCCuCCcUCAG- -5'
5382 3' -58.9 NC_001798.1 + 31788 0.72 0.445535
Target:  5'- cGCGGGUCGggagggcCGGGCGCGGAGGGAGg- -3'
miRNA:   3'- uUGUCUGGC-------GCCUGUGCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 67489 0.71 0.492481
Target:  5'- -gUAGGCCGCgGGGC-CGGGGGGA-UCg -3'
miRNA:   3'- uuGUCUGGCG-CCUGuGCCUCCCUcAG- -5'
5382 3' -58.9 NC_001798.1 + 36071 0.71 0.501956
Target:  5'- --gAGGCUGCGGGCGCGGgguAGGuGGGUg -3'
miRNA:   3'- uugUCUGGCGCCUGUGCC---UCC-CUCAg -5'
5382 3' -58.9 NC_001798.1 + 5039 0.7 0.521138
Target:  5'- ---cGACCGgGGuguGCGgGGGGGGGGUCu -3'
miRNA:   3'- uuguCUGGCgCC---UGUgCCUCCCUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.