miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5382 3' -58.9 NC_001798.1 + 2566 0.72 0.41998
Target:  5'- gGGCGG-CCGCGGG-GCGGGGGGcGUCc -3'
miRNA:   3'- -UUGUCuGGCGCCUgUGCCUCCCuCAG- -5'
5382 3' -58.9 NC_001798.1 + 2998 0.69 0.620354
Target:  5'- cGCGGGCCcCGGGCGCGGGGGcgcggcGGGcCg -3'
miRNA:   3'- uUGUCUGGcGCCUGUGCCUCC------CUCaG- -5'
5382 3' -58.9 NC_001798.1 + 4069 0.68 0.650591
Target:  5'- aGGCGGcCCGCGGuCGCcGcGGGGGUCc -3'
miRNA:   3'- -UUGUCuGGCGCCuGUGcCuCCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 5039 0.7 0.521138
Target:  5'- ---cGACCGgGGuguGCGgGGGGGGGGUCu -3'
miRNA:   3'- uuguCUGGCgCC---UGUgCCUCCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 5912 0.66 0.795295
Target:  5'- aGGCGGGCC-CGGACG-GGGGGcGGGcCg -3'
miRNA:   3'- -UUGUCUGGcGCCUGUgCCUCC-CUCaG- -5'
5382 3' -58.9 NC_001798.1 + 6231 0.66 0.758645
Target:  5'- gGGCcGGCCGgGGGgACGGGcGGGGGa- -3'
miRNA:   3'- -UUGuCUGGCgCCUgUGCCU-CCCUCag -5'
5382 3' -58.9 NC_001798.1 + 6263 0.73 0.411375
Target:  5'- gGACGGGCCGgGGGgACGGgccGGGGGGa- -3'
miRNA:   3'- -UUGUCUGGCgCCUgUGCC---UCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 6302 0.73 0.411375
Target:  5'- gGACGGGCCGgGGGgACGGgccGGGGGGa- -3'
miRNA:   3'- -UUGUCUGGCgCCUgUGCC---UCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 6354 0.73 0.37004
Target:  5'- gGACGGGCCGgGGGgACGGgccGGGGGGcCg -3'
miRNA:   3'- -UUGUCUGGCgCCUgUGCC---UCCCUCaG- -5'
5382 3' -58.9 NC_001798.1 + 6399 0.7 0.560298
Target:  5'- cGGgGGGCCGgGGGgACGGGGGGAc-- -3'
miRNA:   3'- -UUgUCUGGCgCCUgUGCCUCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 6540 0.77 0.234407
Target:  5'- gGACGGGCCGgGGGgACGGGGGGAc-- -3'
miRNA:   3'- -UUGUCUGGCgCCUgUGCCUCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 6582 0.77 0.234407
Target:  5'- gGACGGGCCGgGGGgACGGGGGGAc-- -3'
miRNA:   3'- -UUGUCUGGCgCCUgUGCCUCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 6604 0.74 0.339077
Target:  5'- nACGGGCCGgGGGgACGGGGGGAc-- -3'
miRNA:   3'- uUGUCUGGCgCCUgUGCCUCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 8854 0.68 0.680699
Target:  5'- cGGCGGGCCgggaggucaucGCGGACGCGGaAGGGc--- -3'
miRNA:   3'- -UUGUCUGG-----------CGCCUGUGCC-UCCCucag -5'
5382 3' -58.9 NC_001798.1 + 9142 0.66 0.803245
Target:  5'- uGCGG-CaCGCGGGCGCGGcgccgcccgcgccGGGGGG-Ca -3'
miRNA:   3'- uUGUCuG-GCGCCUGUGCC-------------UCCCUCaG- -5'
5382 3' -58.9 NC_001798.1 + 9657 0.73 0.377268
Target:  5'- cAGCGGGCCGCgcgcggaGGGCGCGGgauGGGGGGcUCu -3'
miRNA:   3'- -UUGUCUGGCG-------CCUGUGCC---UCCCUC-AG- -5'
5382 3' -58.9 NC_001798.1 + 11633 0.66 0.804121
Target:  5'- cGCGGG-CGCGGGCGucccugugucccCGGGggcGGGGGUCg -3'
miRNA:   3'- uUGUCUgGCGCCUGU------------GCCU---CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 15054 0.67 0.710457
Target:  5'- gGAUGGGCC-CGGggcGCGCGGGGGGuGGUUu -3'
miRNA:   3'- -UUGUCUGGcGCC---UGUGCCUCCC-UCAG- -5'
5382 3' -58.9 NC_001798.1 + 15371 0.67 0.720259
Target:  5'- gAAUcGGCCGUGGGCGCGGc-GGAGg- -3'
miRNA:   3'- -UUGuCUGGCGCCUGUGCCucCCUCag -5'
5382 3' -58.9 NC_001798.1 + 15884 0.66 0.758645
Target:  5'- cGCAGggcgcgucgaaACCGCGGGCGgGGuGGGAa-- -3'
miRNA:   3'- uUGUC-----------UGGCGCCUGUgCCuCCCUcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.