miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5382 5' -60.5 NC_001798.1 + 15513 0.66 0.72116
Target:  5'- gGGGCGUuuuCGCUGCGgagGCGCugCUGg -3'
miRNA:   3'- aCCUGCG---GCGACGCaggUGUGugGGC- -5'
5382 5' -60.5 NC_001798.1 + 16195 0.66 0.711553
Target:  5'- gGGACGCacggGCcGCccUCCGCACGCgCCGc -3'
miRNA:   3'- aCCUGCGg---CGaCGc-AGGUGUGUG-GGC- -5'
5382 5' -60.5 NC_001798.1 + 16443 0.71 0.461011
Target:  5'- cGGcuCGCCGCcGCGacacccUCCAUACugCCGa -3'
miRNA:   3'- aCCu-GCGGCGaCGC------AGGUGUGugGGC- -5'
5382 5' -60.5 NC_001798.1 + 16642 0.72 0.39254
Target:  5'- aGGucuUGCCGCccgGCGUCCGCGgaACCCa -3'
miRNA:   3'- aCCu--GCGGCGa--CGCAGGUGUg-UGGGc -5'
5382 5' -60.5 NC_001798.1 + 19830 0.74 0.309868
Target:  5'- gGGGCuuCCGUUGCGcgaCACGCGCCCGg -3'
miRNA:   3'- aCCUGc-GGCGACGCag-GUGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 21698 0.68 0.613337
Target:  5'- ---cCGCCGCUGcCGUCCcggucuccgccGCGCAgCCGg -3'
miRNA:   3'- accuGCGGCGAC-GCAGG-----------UGUGUgGGC- -5'
5382 5' -60.5 NC_001798.1 + 22348 0.67 0.661751
Target:  5'- cGGGCGUCGggGCGgggCCGCGCauaaugcgguuccACCUGg -3'
miRNA:   3'- aCCUGCGGCgaCGCa--GGUGUG-------------UGGGC- -5'
5382 5' -60.5 NC_001798.1 + 22862 0.66 0.749518
Target:  5'- cGGAcCGUCGCccCG-CCGCGCgGCCCGg -3'
miRNA:   3'- aCCU-GCGGCGacGCaGGUGUG-UGGGC- -5'
5382 5' -60.5 NC_001798.1 + 23211 0.71 0.44329
Target:  5'- cGcGACgcggGCCGCUGgGUCCGCGgACCgGa -3'
miRNA:   3'- aC-CUG----CGGCGACgCAGGUGUgUGGgC- -5'
5382 5' -60.5 NC_001798.1 + 23680 0.66 0.740151
Target:  5'- cGGugGCCgGCcGCGacgCCACGgGCCg- -3'
miRNA:   3'- aCCugCGG-CGaCGCa--GGUGUgUGGgc -5'
5382 5' -60.5 NC_001798.1 + 24695 0.67 0.692159
Target:  5'- -cGGC-CCGCcGCGcCCcCGCGCCCGg -3'
miRNA:   3'- acCUGcGGCGaCGCaGGuGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 24726 0.69 0.535291
Target:  5'- cGGGCGCgGCcGCcccgCCGCACGCCg- -3'
miRNA:   3'- aCCUGCGgCGaCGca--GGUGUGUGGgc -5'
5382 5' -60.5 NC_001798.1 + 24909 0.67 0.652873
Target:  5'- -cGGCGCUGCcGCGgagCC-CGCGCCUGc -3'
miRNA:   3'- acCUGCGGCGaCGCa--GGuGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 25087 0.77 0.190142
Target:  5'- aGGGCGCCGCcggGCGgcgCCcCGCGCCCc -3'
miRNA:   3'- aCCUGCGGCGa--CGCa--GGuGUGUGGGc -5'
5382 5' -60.5 NC_001798.1 + 25190 0.71 0.44329
Target:  5'- -cGACGCCGCcgccGCGgccgCCGCGC-CCCGc -3'
miRNA:   3'- acCUGCGGCGa---CGCa---GGUGUGuGGGC- -5'
5382 5' -60.5 NC_001798.1 + 25429 0.71 0.442414
Target:  5'- cUGGcCGCgCGCUGCGccgCCccgccccccggcgGCGCGCCCGc -3'
miRNA:   3'- -ACCuGCG-GCGACGCa--GG-------------UGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 25496 0.75 0.26454
Target:  5'- cGGGC-CCGCUGCG-CCGCGCggcgGCCUGg -3'
miRNA:   3'- aCCUGcGGCGACGCaGGUGUG----UGGGC- -5'
5382 5' -60.5 NC_001798.1 + 25760 0.76 0.235565
Target:  5'- aGGGCguGCUGCUGCuGUCCACGCgggACCUGg -3'
miRNA:   3'- aCCUG--CGGCGACG-CAGGUGUG---UGGGC- -5'
5382 5' -60.5 NC_001798.1 + 26040 0.68 0.613337
Target:  5'- gUGGAgGCCGC-GCa--CGCGCGCCUGu -3'
miRNA:   3'- -ACCUgCGGCGaCGcagGUGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 26301 0.68 0.613337
Target:  5'- cUGGgcGCGCCGCUGCGgcccgUCUACgugGCGCUgGg -3'
miRNA:   3'- -ACC--UGCGGCGACGC-----AGGUG---UGUGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.