miRNA display CGI


Results 1 - 20 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5382 5' -60.5 NC_001798.1 + 153 0.69 0.552614
Target:  5'- cGGGCGCCGCcccuccccCCGCGCGCCgCGg -3'
miRNA:   3'- aCCUGCGGCGacgca---GGUGUGUGG-GC- -5'
5382 5' -60.5 NC_001798.1 + 197 0.67 0.642994
Target:  5'- cGGGCGCCcCcGCGcggcuuuuuUCC-CGCGCCCGc -3'
miRNA:   3'- aCCUGCGGcGaCGC---------AGGuGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 660 0.71 0.461011
Target:  5'- cGGGCGCgGgaGaCGUgCCGCcCGCCCGa -3'
miRNA:   3'- aCCUGCGgCgaC-GCA-GGUGuGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 1362 0.69 0.564257
Target:  5'- cGGGcCGCCGCgcacgGCGUC-GCGC-CCCa -3'
miRNA:   3'- aCCU-GCGGCGa----CGCAGgUGUGuGGGc -5'
5382 5' -60.5 NC_001798.1 + 1484 0.74 0.309868
Target:  5'- cGGGCGCCaugGCGUCgCcCGCGCCCGa -3'
miRNA:   3'- aCCUGCGGcgaCGCAG-GuGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 2203 0.68 0.633106
Target:  5'- aGGcCGCCGCgcgGCG-CaGCGgGCCCGa -3'
miRNA:   3'- aCCuGCGGCGa--CGCaGgUGUgUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 2565 0.72 0.400734
Target:  5'- gGGGCgGCCGCggggcgggggGCGUCCGCGCgGCUCu -3'
miRNA:   3'- aCCUG-CGGCGa---------CGCAGGUGUG-UGGGc -5'
5382 5' -60.5 NC_001798.1 + 2616 0.71 0.452103
Target:  5'- gGGGCGCCGCccgGCGgcgCC-CugGCCgGg -3'
miRNA:   3'- aCCUGCGGCGa--CGCa--GGuGugUGGgC- -5'
5382 5' -60.5 NC_001798.1 + 3256 0.7 0.506864
Target:  5'- cGcGGCGCCGUagccgGCGggcaCCGCGCGCUCGu -3'
miRNA:   3'- aC-CUGCGGCGa----CGCa---GGUGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 3573 0.66 0.740151
Target:  5'- gGGGCaCgGCccGCG-CCACGCugCCGg -3'
miRNA:   3'- aCCUGcGgCGa-CGCaGGUGUGugGGC- -5'
5382 5' -60.5 NC_001798.1 + 3606 0.67 0.692159
Target:  5'- aGGAgcUGCUGUUGCG-CgC-CGCGCCCGa -3'
miRNA:   3'- aCCU--GCGGCGACGCaG-GuGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 3740 0.75 0.270671
Target:  5'- aGGGCGUacUGCUGCG-CCGCGuCGCCCa -3'
miRNA:   3'- aCCUGCG--GCGACGCaGGUGU-GUGGGc -5'
5382 5' -60.5 NC_001798.1 + 3783 0.68 0.623219
Target:  5'- cGGGCGCCGggGCGcCCGaggccucgaacCGgGCCCGc -3'
miRNA:   3'- aCCUGCGGCgaCGCaGGU-----------GUgUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 3966 0.74 0.285852
Target:  5'- cGGAgGCCGCgucgGCGUCCagcucgaccgccgggGC-CGCCCGg -3'
miRNA:   3'- aCCUgCGGCGa---CGCAGG---------------UGuGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 4472 0.69 0.525749
Target:  5'- cGGACGUCGuCUcCgGUCCGCGgACCCa -3'
miRNA:   3'- aCCUGCGGC-GAcG-CAGGUGUgUGGGc -5'
5382 5' -60.5 NC_001798.1 + 5369 0.66 0.72116
Target:  5'- -cGACGcCCGC-GCGUCCGCguccguggcgGCGgCCCGu -3'
miRNA:   3'- acCUGC-GGCGaCGCAGGUG----------UGU-GGGC- -5'
5382 5' -60.5 NC_001798.1 + 6054 0.67 0.652873
Target:  5'- aGaGACGCCgGCggcgaGCGgggcaCCgACGCACCCGg -3'
miRNA:   3'- aC-CUGCGG-CGa----CGCa----GG-UGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 7916 0.69 0.564257
Target:  5'- cGGcuGCGCC-CUGCGUCCaaACACAUCg- -3'
miRNA:   3'- aCC--UGCGGcGACGCAGG--UGUGUGGgc -5'
5382 5' -60.5 NC_001798.1 + 10329 0.69 0.55455
Target:  5'- gGGaACGCUgaccgGCgUGCGUUCGuCACGCCCGc -3'
miRNA:   3'- aCC-UGCGG-----CG-ACGCAGGU-GUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 15380 0.73 0.353241
Target:  5'- gUGGGCGCgGCggagGCGcCCAcCGgACCCGg -3'
miRNA:   3'- -ACCUGCGgCGa---CGCaGGU-GUgUGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.