miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5382 5' -60.5 NC_001798.1 + 110630 0.8 0.128185
Target:  5'- gUGGACGCaGCgGCGUCCACGCccaACCCa -3'
miRNA:   3'- -ACCUGCGgCGaCGCAGGUGUG---UGGGc -5'
5382 5' -60.5 NC_001798.1 + 116774 0.79 0.148867
Target:  5'- -cGGCGCUGCUGUGcUCCGCGgCGCCCGa -3'
miRNA:   3'- acCUGCGGCGACGC-AGGUGU-GUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 25087 0.77 0.190142
Target:  5'- aGGGCGCCGCcggGCGgcgCCcCGCGCCCc -3'
miRNA:   3'- aCCUGCGGCGa--CGCa--GGuGUGUGGGc -5'
5382 5' -60.5 NC_001798.1 + 43089 0.77 0.20436
Target:  5'- cGGGCGCCGCcgccGCGUCCGCG-ACCaCGg -3'
miRNA:   3'- aCCUGCGGCGa---CGCAGGUGUgUGG-GC- -5'
5382 5' -60.5 NC_001798.1 + 151628 0.77 0.2093
Target:  5'- gGGGCGUgGCcGCGUCCAuCAgGCCCGc -3'
miRNA:   3'- aCCUGCGgCGaCGCAGGU-GUgUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 135502 0.77 0.2093
Target:  5'- cGGACGCCGCgcacgGCGcgaUCCAgGaCGCCCGc -3'
miRNA:   3'- aCCUGCGGCGa----CGC---AGGUgU-GUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 74772 0.76 0.214343
Target:  5'- cGGACGCCGCggccucGgGUCCAcCGCACgCCGc -3'
miRNA:   3'- aCCUGCGGCGa-----CgCAGGU-GUGUG-GGC- -5'
5382 5' -60.5 NC_001798.1 + 47872 0.76 0.224741
Target:  5'- gUGGGCGCCgGCggGCGcUCGCACGCCCc -3'
miRNA:   3'- -ACCUGCGG-CGa-CGCaGGUGUGUGGGc -5'
5382 5' -60.5 NC_001798.1 + 98574 0.76 0.230099
Target:  5'- cUGGugGCCGCggugGCGUCgGCgGC-CCCGg -3'
miRNA:   3'- -ACCugCGGCGa---CGCAGgUG-UGuGGGC- -5'
5382 5' -60.5 NC_001798.1 + 25760 0.76 0.235565
Target:  5'- aGGGCguGCUGCUGCuGUCCACGCgggACCUGg -3'
miRNA:   3'- aCCUG--CGGCGACG-CAGGUGUG---UGGGC- -5'
5382 5' -60.5 NC_001798.1 + 25496 0.75 0.26454
Target:  5'- cGGGC-CCGCUGCG-CCGCGCggcgGCCUGg -3'
miRNA:   3'- aCCUGcGGCGACGCaGGUGUG----UGGGC- -5'
5382 5' -60.5 NC_001798.1 + 3740 0.75 0.270671
Target:  5'- aGGGCGUacUGCUGCG-CCGCGuCGCCCa -3'
miRNA:   3'- aCCUGCG--GCGACGCaGGUGU-GUGGGc -5'
5382 5' -60.5 NC_001798.1 + 3966 0.74 0.285852
Target:  5'- cGGAgGCCGCgucgGCGUCCagcucgaccgccgggGC-CGCCCGg -3'
miRNA:   3'- aCCUgCGGCGa---CGCAGG---------------UGuGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 111011 0.74 0.287796
Target:  5'- aUGcGugGCCGCggccagGCGUCCguggccggcguacaACACGCCCa -3'
miRNA:   3'- -AC-CugCGGCGa-----CGCAGG--------------UGUGUGGGc -5'
5382 5' -60.5 NC_001798.1 + 92975 0.74 0.28975
Target:  5'- gUGGACGCCGUggcccGCGcggCCGCcCACCUGg -3'
miRNA:   3'- -ACCUGCGGCGa----CGCa--GGUGuGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 48164 0.74 0.28975
Target:  5'- cGGGCGCCug-GCGgccaCGCACGCCCGg -3'
miRNA:   3'- aCCUGCGGcgaCGCag--GUGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 84795 0.74 0.29634
Target:  5'- gGGAggccaGCCGCUGCGUCCGCGagagguaguuCACuuGg -3'
miRNA:   3'- aCCUg----CGGCGACGCAGGUGU----------GUGggC- -5'
5382 5' -60.5 NC_001798.1 + 1484 0.74 0.309868
Target:  5'- cGGGCGCCaugGCGUCgCcCGCGCCCGa -3'
miRNA:   3'- aCCUGCGGcgaCGCAG-GuGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 19830 0.74 0.309868
Target:  5'- gGGGCuuCCGUUGCGcgaCACGCGCCCGg -3'
miRNA:   3'- aCCUGc-GGCGACGCag-GUGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 133766 0.74 0.309868
Target:  5'- gGGGCGCUGCuUGCG-CaCGCACGCCUc -3'
miRNA:   3'- aCCUGCGGCG-ACGCaG-GUGUGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.