miRNA display CGI


Results 41 - 60 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5392 5' -51 NC_001798.1 + 110884 0.67 0.985872
Target:  5'- gCGCguccagguacccgGCGGUucGCGugcgGCCAGCCgCCCCc -3'
miRNA:   3'- -GCGa------------UGCUA--UGCua--UGGUUGGaGGGG- -5'
5392 5' -51 NC_001798.1 + 124050 0.68 0.984818
Target:  5'- gGCUGCuAUccAgGAuUACCGACC-CCCCg -3'
miRNA:   3'- gCGAUGcUA--UgCU-AUGGUUGGaGGGG- -5'
5392 5' -51 NC_001798.1 + 81555 0.68 0.984818
Target:  5'- aGCUACGGcucGCGAaACaCGACCgagugUCCCg -3'
miRNA:   3'- gCGAUGCUa--UGCUaUG-GUUGGa----GGGG- -5'
5392 5' -51 NC_001798.1 + 153829 0.68 0.982929
Target:  5'- gCGCgGCG-UGCGggGCCuccggcGCCUUCCCc -3'
miRNA:   3'- -GCGaUGCuAUGCuaUGGu-----UGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 62032 0.68 0.982929
Target:  5'- uCGCgUACGugcAUACcacgGAUACCGAUCUCCUg -3'
miRNA:   3'- -GCG-AUGC---UAUG----CUAUGGUUGGAGGGg -5'
5392 5' -51 NC_001798.1 + 138995 0.68 0.980868
Target:  5'- cCGCU-CGGccaccccgGCGAUAUCGcCCUCCCg -3'
miRNA:   3'- -GCGAuGCUa-------UGCUAUGGUuGGAGGGg -5'
5392 5' -51 NC_001798.1 + 87493 0.68 0.978627
Target:  5'- gGCUcauCGAUcgGAUGCUGACCgcgugCCCCg -3'
miRNA:   3'- gCGAu--GCUAugCUAUGGUUGGa----GGGG- -5'
5392 5' -51 NC_001798.1 + 143813 0.68 0.978627
Target:  5'- gGCccggGCGGcGCGcgGCCAGCCguuggaccaCCCCg -3'
miRNA:   3'- gCGa---UGCUaUGCuaUGGUUGGa--------GGGG- -5'
5392 5' -51 NC_001798.1 + 3010 0.68 0.978627
Target:  5'- gCGCggggGCGcgGCGGgccgggcuCCGGCCagCCCCg -3'
miRNA:   3'- -GCGa---UGCuaUGCUau------GGUUGGa-GGGG- -5'
5392 5' -51 NC_001798.1 + 26440 0.68 0.978627
Target:  5'- uGCUGCGcgACGAcgcggacGCgGGCCcgCCCCc -3'
miRNA:   3'- gCGAUGCuaUGCUa------UGgUUGGa-GGGG- -5'
5392 5' -51 NC_001798.1 + 35147 0.68 0.978627
Target:  5'- gCGCgcCGGUGCGcggAgCAGCCUUCCUu -3'
miRNA:   3'- -GCGauGCUAUGCua-UgGUUGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 53131 0.68 0.978627
Target:  5'- gGCUggcGCGGUGCcuGAcgccgGCCAACCUCaUCCg -3'
miRNA:   3'- gCGA---UGCUAUG--CUa----UGGUUGGAG-GGG- -5'
5392 5' -51 NC_001798.1 + 94823 0.68 0.978392
Target:  5'- gGaCUACGGcGCGAuuaacuuUAUCAACCUggcCCCCa -3'
miRNA:   3'- gC-GAUGCUaUGCU-------AUGGUUGGA---GGGG- -5'
5392 5' -51 NC_001798.1 + 81434 0.68 0.976197
Target:  5'- aGCUgGCGuccgACGAcGCCGGCggCCCCa -3'
miRNA:   3'- gCGA-UGCua--UGCUaUGGUUGgaGGGG- -5'
5392 5' -51 NC_001798.1 + 91469 0.68 0.976197
Target:  5'- aGCU-CGGggugggaugGCGGUGCCGAUgUUCCCc -3'
miRNA:   3'- gCGAuGCUa--------UGCUAUGGUUGgAGGGG- -5'
5392 5' -51 NC_001798.1 + 128168 0.68 0.976197
Target:  5'- uGCUGCGcgGCGu--CCG--CUCCCCu -3'
miRNA:   3'- gCGAUGCuaUGCuauGGUugGAGGGG- -5'
5392 5' -51 NC_001798.1 + 2968 0.69 0.97357
Target:  5'- gCGCgucgGCGugcgGCGGggcgGCCGGCCcgcgggCCCCg -3'
miRNA:   3'- -GCGa---UGCua--UGCUa---UGGUUGGa-----GGGG- -5'
5392 5' -51 NC_001798.1 + 82391 0.69 0.97074
Target:  5'- gCGCU-CGGUGCc---CCAGCCgCCCCu -3'
miRNA:   3'- -GCGAuGCUAUGcuauGGUUGGaGGGG- -5'
5392 5' -51 NC_001798.1 + 118624 0.69 0.968941
Target:  5'- gCGCUgcaGCGGUGCGAgggucgaguggucuuUcuGCCGACCaUCCgCCg -3'
miRNA:   3'- -GCGA---UGCUAUGCU---------------A--UGGUUGG-AGG-GG- -5'
5392 5' -51 NC_001798.1 + 96892 0.69 0.967699
Target:  5'- aGCUGCGA--CGGUACCuGCCccacgCCgCCg -3'
miRNA:   3'- gCGAUGCUauGCUAUGGuUGGa----GG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.