miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5392 5' -51 NC_001798.1 + 72243 0.79 0.533249
Target:  5'- aGCUGCGGcccGCGGU-CCAgcuGCCUCCCCc -3'
miRNA:   3'- gCGAUGCUa--UGCUAuGGU---UGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 451 0.79 0.574132
Target:  5'- gGCUGCGGUccCGcgGCC-GCCUCCCCc -3'
miRNA:   3'- gCGAUGCUAu-GCuaUGGuUGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 34314 0.75 0.768746
Target:  5'- uCGCggGCGGUGCGGcugACCuGCCUgCCCu -3'
miRNA:   3'- -GCGa-UGCUAUGCUa--UGGuUGGAgGGG- -5'
5392 5' -51 NC_001798.1 + 94214 0.75 0.778298
Target:  5'- aGCUccucGCGcgGCGGU-CCAACCUCgCCg -3'
miRNA:   3'- gCGA----UGCuaUGCUAuGGUUGGAGgGG- -5'
5392 5' -51 NC_001798.1 + 31155 0.73 0.849031
Target:  5'- gGCgGCGGUGCGGgggcgACCcgcggAACCUCCCa -3'
miRNA:   3'- gCGaUGCUAUGCUa----UGG-----UUGGAGGGg -5'
5392 5' -51 NC_001798.1 + 90431 0.72 0.899082
Target:  5'- gGCU-UGAgGCGGUACCAGCCgaaggugacaaaCCCCg -3'
miRNA:   3'- gCGAuGCUaUGCUAUGGUUGGa-----------GGGG- -5'
5392 5' -51 NC_001798.1 + 38417 0.72 0.900392
Target:  5'- gCGCUAUGAaGCGGgcCgGGCCggggCCCCa -3'
miRNA:   3'- -GCGAUGCUaUGCUauGgUUGGa---GGGG- -5'
5392 5' -51 NC_001798.1 + 39733 0.72 0.900392
Target:  5'- gGgUugGAUGCGG-GCCAcCUUCCCCc -3'
miRNA:   3'- gCgAugCUAUGCUaUGGUuGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 67317 0.71 0.912953
Target:  5'- gCGCcACGAcgGCGGU-UCGGCCaUCCCCg -3'
miRNA:   3'- -GCGaUGCUa-UGCUAuGGUUGG-AGGGG- -5'
5392 5' -51 NC_001798.1 + 134181 0.71 0.918865
Target:  5'- cCGCgcCGcgACGGccccgGCC-GCCUCCCCg -3'
miRNA:   3'- -GCGauGCuaUGCUa----UGGuUGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 79623 0.71 0.918865
Target:  5'- cCGCUGCaGUACGc-GCUAugCUUCCCg -3'
miRNA:   3'- -GCGAUGcUAUGCuaUGGUugGAGGGG- -5'
5392 5' -51 NC_001798.1 + 127001 0.71 0.929942
Target:  5'- uGCUGCGAUcggacGCGGUgucgcuccgGCCGGCCgUCCUg -3'
miRNA:   3'- gCGAUGCUA-----UGCUA---------UGGUUGG-AGGGg -5'
5392 5' -51 NC_001798.1 + 43794 0.7 0.935106
Target:  5'- aGCUGCGAUcguggGCGAUG--AACUUCUCCa -3'
miRNA:   3'- gCGAUGCUA-----UGCUAUggUUGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 108785 0.7 0.940023
Target:  5'- uGCUACGGacuccgggucggUACGuGUACC--UCUCCCCg -3'
miRNA:   3'- gCGAUGCU------------AUGC-UAUGGuuGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 117410 0.7 0.944693
Target:  5'- cCGUUACGG-ACaugGgCAACCUCCCCc -3'
miRNA:   3'- -GCGAUGCUaUGcuaUgGUUGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 122105 0.7 0.953301
Target:  5'- cCGCccgGCGGgggGCGcuuUGCCAGCCgggggggCCCCc -3'
miRNA:   3'- -GCGa--UGCUa--UGCu--AUGGUUGGa------GGGG- -5'
5392 5' -51 NC_001798.1 + 10979 0.7 0.953301
Target:  5'- gGCgGCGAcuccuuaaaUGCGcgGCgGGCCUCUCCg -3'
miRNA:   3'- gCGaUGCU---------AUGCuaUGgUUGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 54539 0.7 0.957247
Target:  5'- cCGC-ACGucgACGcgGCCGACCggggUCCCg -3'
miRNA:   3'- -GCGaUGCua-UGCuaUGGUUGGa---GGGG- -5'
5392 5' -51 NC_001798.1 + 76324 0.69 0.960958
Target:  5'- uGCUGCGGgaccugcuccaGCGggGCCAGCCccuagaugCCCCc -3'
miRNA:   3'- gCGAUGCUa----------UGCuaUGGUUGGa-------GGGG- -5'
5392 5' -51 NC_001798.1 + 53320 0.69 0.960958
Target:  5'- gGCUgGCGGcGCGGcACCAuaacACCgUCCCCg -3'
miRNA:   3'- gCGA-UGCUaUGCUaUGGU----UGG-AGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.