miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5392 5' -51 NC_001798.1 + 451 0.79 0.574132
Target:  5'- gGCUGCGGUccCGcgGCC-GCCUCCCCc -3'
miRNA:   3'- gCGAUGCUAu-GCuaUGGuUGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 2436 0.67 0.986543
Target:  5'- gGCcccgGCGGcugGCGGcGCCAGCCgCCCUg -3'
miRNA:   3'- gCGa---UGCUa--UGCUaUGGUUGGaGGGG- -5'
5392 5' -51 NC_001798.1 + 2968 0.69 0.97357
Target:  5'- gCGCgucgGCGugcgGCGGggcgGCCGGCCcgcgggCCCCg -3'
miRNA:   3'- -GCGa---UGCua--UGCUa---UGGUUGGa-----GGGG- -5'
5392 5' -51 NC_001798.1 + 3010 0.68 0.978627
Target:  5'- gCGCggggGCGcgGCGGgccgggcuCCGGCCagCCCCg -3'
miRNA:   3'- -GCGa---UGCuaUGCUau------GGUUGGa-GGGG- -5'
5392 5' -51 NC_001798.1 + 3884 0.66 0.993026
Target:  5'- aCGCgcccCGGggGCGGgggGCCGGCCccgggccacggcUCCCCg -3'
miRNA:   3'- -GCGau--GCUa-UGCUa--UGGUUGG------------AGGGG- -5'
5392 5' -51 NC_001798.1 + 4698 0.66 0.995087
Target:  5'- cCGCgGCGAgACGAcGCCguccgcGgcaggcucgucgacgGCCUCCCCg -3'
miRNA:   3'- -GCGaUGCUaUGCUaUGG------U---------------UGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 5290 0.66 0.995516
Target:  5'- aGgaGCGAU-CGAcGCCG-CCgcgCCCCg -3'
miRNA:   3'- gCgaUGCUAuGCUaUGGUuGGa--GGGG- -5'
5392 5' -51 NC_001798.1 + 6953 0.66 0.996102
Target:  5'- uGCUGgccccuUGAUACGAUcucgucgACCGgGgCUCCCCu -3'
miRNA:   3'- gCGAU------GCUAUGCUA-------UGGU-UgGAGGGG- -5'
5392 5' -51 NC_001798.1 + 10840 0.67 0.987963
Target:  5'- gGC-ACGAUACGAcccaaacUccaacaaaaaacACCAACCcggCCCCg -3'
miRNA:   3'- gCGaUGCUAUGCU-------A------------UGGUUGGa--GGGG- -5'
5392 5' -51 NC_001798.1 + 10979 0.7 0.953301
Target:  5'- gGCgGCGAcuccuuaaaUGCGcgGCgGGCCUCUCCg -3'
miRNA:   3'- gCGaUGCU---------AUGCuaUGgUUGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 22940 0.67 0.991986
Target:  5'- cCGCcgcCGAUGCcGUGCCGACgaggcggCCCCg -3'
miRNA:   3'- -GCGau-GCUAUGcUAUGGUUGga-----GGGG- -5'
5392 5' -51 NC_001798.1 + 26440 0.68 0.978627
Target:  5'- uGCUGCGcgACGAcgcggacGCgGGCCcgCCCCc -3'
miRNA:   3'- gCGAUGCuaUGCUa------UGgUUGGa-GGGG- -5'
5392 5' -51 NC_001798.1 + 28392 0.67 0.986543
Target:  5'- cCGC-GCGGgaaGGUAC--GCCUCCCCu -3'
miRNA:   3'- -GCGaUGCUaugCUAUGguUGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 31155 0.73 0.849031
Target:  5'- gGCgGCGGUGCGGgggcgACCcgcggAACCUCCCa -3'
miRNA:   3'- gCGaUGCUAUGCUa----UGG-----UUGGAGGGg -5'
5392 5' -51 NC_001798.1 + 34314 0.75 0.768746
Target:  5'- uCGCggGCGGUGCGGcugACCuGCCUgCCCu -3'
miRNA:   3'- -GCGa-UGCUAUGCUa--UGGuUGGAgGGG- -5'
5392 5' -51 NC_001798.1 + 35147 0.68 0.978627
Target:  5'- gCGCgcCGGUGCGcggAgCAGCCUUCCUu -3'
miRNA:   3'- -GCGauGCUAUGCua-UgGUUGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 35543 0.67 0.986543
Target:  5'- gGC-GCGggGCGuUGCCGGCCcggcccggCCCCg -3'
miRNA:   3'- gCGaUGCuaUGCuAUGGUUGGa-------GGGG- -5'
5392 5' -51 NC_001798.1 + 38417 0.72 0.900392
Target:  5'- gCGCUAUGAaGCGGgcCgGGCCggggCCCCa -3'
miRNA:   3'- -GCGAUGCUaUGCUauGgUUGGa---GGGG- -5'
5392 5' -51 NC_001798.1 + 39733 0.72 0.900392
Target:  5'- gGgUugGAUGCGG-GCCAcCUUCCCCc -3'
miRNA:   3'- gCgAugCUAUGCUaUGGUuGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 39871 0.67 0.991986
Target:  5'- gGCUuCGGg--GGUGCCGGCgUCCUCg -3'
miRNA:   3'- gCGAuGCUaugCUAUGGUUGgAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.