miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5393 3' -60.8 NC_001798.1 + 96725 0.69 0.48688
Target:  5'- -cGgGCCUCAUCGUGCccccGGAGCUgAg -3'
miRNA:   3'- caCgCGGAGUGGCGCGa---CCUCGAgUa -5'
5393 3' -60.8 NC_001798.1 + 97721 0.68 0.544691
Target:  5'- cGUGCGCgagCAgCGCGg-GGAGCUCGa -3'
miRNA:   3'- -CACGCGga-GUgGCGCgaCCUCGAGUa -5'
5393 3' -60.8 NC_001798.1 + 99178 0.67 0.588456
Target:  5'- -cGCGUUUCACCGggacgaccacgagacCGacaUGGAGCUCAa -3'
miRNA:   3'- caCGCGGAGUGGC---------------GCg--ACCUCGAGUa -5'
5393 3' -60.8 NC_001798.1 + 100387 0.72 0.326972
Target:  5'- cUGCGCCUCACCcgcgacGCGCUcGAGC-CGUg -3'
miRNA:   3'- cACGCGGAGUGG------CGCGAcCUCGaGUA- -5'
5393 3' -60.8 NC_001798.1 + 103013 0.66 0.644933
Target:  5'- gGUGCGCCcgGCCaGCGC--GAGCUCGg -3'
miRNA:   3'- -CACGCGGagUGG-CGCGacCUCGAGUa -5'
5393 3' -60.8 NC_001798.1 + 107663 0.66 0.655024
Target:  5'- uUGCGCCUCACCGC-CgGGAugaucccaacccGCgUCAc -3'
miRNA:   3'- cACGCGGAGUGGCGcGaCCU------------CG-AGUa -5'
5393 3' -60.8 NC_001798.1 + 108601 0.69 0.477521
Target:  5'- -cGCGCCggACCGCGa-GGGGCUUAc -3'
miRNA:   3'- caCGCGGagUGGCGCgaCCUCGAGUa -5'
5393 3' -60.8 NC_001798.1 + 110520 0.67 0.604547
Target:  5'- cUG-GCCgCGuCCGCGCUGGGGgUCGUu -3'
miRNA:   3'- cACgCGGaGU-GGCGCGACCUCgAGUA- -5'
5393 3' -60.8 NC_001798.1 + 115300 0.67 0.57444
Target:  5'- -aGCGCUUCGCCGCGCacgccggGGAcCUgGUg -3'
miRNA:   3'- caCGCGGAGUGGCGCGa------CCUcGAgUA- -5'
5393 3' -60.8 NC_001798.1 + 117991 0.67 0.594482
Target:  5'- -aGCGCC-CGCCGgGgUGccgcGAGCUCGUg -3'
miRNA:   3'- caCGCGGaGUGGCgCgAC----CUCGAGUA- -5'
5393 3' -60.8 NC_001798.1 + 130263 0.71 0.365078
Target:  5'- --aCGCCUagaACCGCGCaUGGAGCUgCGUa -3'
miRNA:   3'- cacGCGGAg--UGGCGCG-ACCUCGA-GUA- -5'
5393 3' -60.8 NC_001798.1 + 135308 0.68 0.544691
Target:  5'- cUGgGCCcggGCCGUGCUGGAGCg--- -3'
miRNA:   3'- cACgCGGag-UGGCGCGACCUCGagua -5'
5393 3' -60.8 NC_001798.1 + 141479 0.69 0.468251
Target:  5'- --cCGgCUCGCCGCGCggGGGGCUgAUg -3'
miRNA:   3'- cacGCgGAGUGGCGCGa-CCUCGAgUA- -5'
5393 3' -60.8 NC_001798.1 + 154046 0.66 0.644933
Target:  5'- -cGCGCCggggCGCgGCacgGCUGGAGCg--- -3'
miRNA:   3'- caCGCGGa---GUGgCG---CGACCUCGagua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.