miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5393 5' -56.6 NC_001798.1 + 27513 0.7 0.672756
Target:  5'- cGCGCGggGGCGCCcgcgggaaggcaGCCCCgcggcgcgcgGGGGGAGg -3'
miRNA:   3'- -CGUGU--UUGUGG------------UGGGGaca-------CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 29493 0.69 0.734507
Target:  5'- cCGgGGACgggGCCGCCCCgagaGGGGGGGa -3'
miRNA:   3'- cGUgUUUG---UGGUGGGGaca-CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 29570 0.79 0.239519
Target:  5'- --gUAAAUGCCGCCCCUuUGGGGGAGu -3'
miRNA:   3'- cguGUUUGUGGUGGGGAcACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 29995 0.7 0.674778
Target:  5'- gGC-CGuGCGCCGCCCCccgacccucUGGGGGGGc -3'
miRNA:   3'- -CGuGUuUGUGGUGGGGac-------ACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 30250 0.69 0.763305
Target:  5'- -aGCAGccCGCCGCCCCgcacgccUGGGGGAu -3'
miRNA:   3'- cgUGUUu-GUGGUGGGGac-----ACCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 30475 0.67 0.858267
Target:  5'- cCGCcGACGCgCAgggaUCCUGUGGGGGuGg -3'
miRNA:   3'- cGUGuUUGUG-GUg---GGGACACCCCCuC- -5'
5393 5' -56.6 NC_001798.1 + 30822 0.66 0.900418
Target:  5'- cCGCGGACGgccCCGCgcuCCCUGUcgcugGGGGGAc -3'
miRNA:   3'- cGUGUUUGU---GGUG---GGGACA-----CCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 31523 0.72 0.543338
Target:  5'- cGCACAggUGuCCucggGCCCCgggGGGGGAGg -3'
miRNA:   3'- -CGUGUuuGU-GG----UGGGGacaCCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 31956 0.66 0.880324
Target:  5'- cGCGCu--CGCCccucGCCCCccaggggGUGGGGGc- -3'
miRNA:   3'- -CGUGuuuGUGG----UGGGGa------CACCCCCuc -5'
5393 5' -56.6 NC_001798.1 + 34062 0.7 0.70392
Target:  5'- gGC-CGGGCACgCGCCUUUGggguuguUGGGGGGGg -3'
miRNA:   3'- -CGuGUUUGUG-GUGGGGAC-------ACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 36395 0.67 0.834392
Target:  5'- uGCGC-GGCGCCGgggccCCCCUGccGGGcGGGGc -3'
miRNA:   3'- -CGUGuUUGUGGU-----GGGGACa-CCC-CCUC- -5'
5393 5' -56.6 NC_001798.1 + 40487 0.67 0.82606
Target:  5'- cGgACGAGCcuGCCugUgCUGggccGGGGGAGg -3'
miRNA:   3'- -CgUGUUUG--UGGugGgGACa---CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 43379 0.68 0.800049
Target:  5'- gGUGCGAACGCgGgCCagccGUGGGGGAc -3'
miRNA:   3'- -CGUGUUUGUGgUgGGga--CACCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 47841 0.66 0.887246
Target:  5'- cGCGCGcGCuccuCCACCCCcc-GGGGGc- -3'
miRNA:   3'- -CGUGUuUGu---GGUGGGGacaCCCCCuc -5'
5393 5' -56.6 NC_001798.1 + 54240 0.68 0.791067
Target:  5'- cCACGAugACCGCCCCgagcUGGGcccGGAu -3'
miRNA:   3'- cGUGUUugUGGUGGGGac--ACCC---CCUc -5'
5393 5' -56.6 NC_001798.1 + 65672 0.66 0.86583
Target:  5'- gGUACAcGCA-CGCCCCgGUGGGGc-- -3'
miRNA:   3'- -CGUGUuUGUgGUGGGGaCACCCCcuc -5'
5393 5' -56.6 NC_001798.1 + 67159 0.74 0.448053
Target:  5'- gGCGC-AGCACUcgugGCCCCaUGgaaagGGGGGAGg -3'
miRNA:   3'- -CGUGuUUGUGG----UGGGG-ACa----CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 68585 0.67 0.849715
Target:  5'- cGCuCGAGgGCCGCCuCCaGUccgcgcgGGGGGAGc -3'
miRNA:   3'- -CGuGUUUgUGGUGG-GGaCA-------CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 69174 0.67 0.850502
Target:  5'- aGCcCGAugGCgGgCCagGUGGGGGAGg -3'
miRNA:   3'- -CGuGUUugUGgUgGGgaCACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 74490 0.69 0.72472
Target:  5'- gGCGCGuggccauCACCcacCCCCUGcGGGGcGAGa -3'
miRNA:   3'- -CGUGUuu-----GUGGu--GGGGACaCCCC-CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.