miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5393 5' -56.6 NC_001798.1 + 150 0.66 0.886564
Target:  5'- cCGCGGGCGCCGCCCCUccccccgcgcgccGcGGGGc-- -3'
miRNA:   3'- cGUGUUUGUGGUGGGGA-------------CaCCCCcuc -5'
5393 5' -56.6 NC_001798.1 + 568 0.66 0.887246
Target:  5'- cGCGCcccguGCcuucccucCCGCUCCUGcGGGGGGGc -3'
miRNA:   3'- -CGUGuu---UGu-------GGUGGGGACaCCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 2077 0.69 0.72472
Target:  5'- cGCGCucGGCggACCACUCCg--GGGGGGGc -3'
miRNA:   3'- -CGUGu-UUG--UGGUGGGGacaCCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 2611 0.68 0.808881
Target:  5'- gGCGCgGGGCGCCGCccggcggcgCCCUGgccGGGGcGGGg -3'
miRNA:   3'- -CGUG-UUUGUGGUG---------GGGACa--CCCC-CUC- -5'
5393 5' -56.6 NC_001798.1 + 3876 0.69 0.72472
Target:  5'- cGUAC-AGCACgCGCCCCgggGGcGGGGGg -3'
miRNA:   3'- -CGUGuUUGUG-GUGGGGacaCC-CCCUC- -5'
5393 5' -56.6 NC_001798.1 + 5023 0.68 0.800049
Target:  5'- cCGCcGACAUCGCCUCcgaccggggUGUGcGGGGGGg -3'
miRNA:   3'- cGUGuUUGUGGUGGGG---------ACAC-CCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 5614 0.66 0.880324
Target:  5'- cCGCGGGCGgcuCCGCCCCaaagGGGGcGGGg -3'
miRNA:   3'- cGUGUUUGU---GGUGGGGaca-CCCC-CUC- -5'
5393 5' -56.6 NC_001798.1 + 6675 0.67 0.850502
Target:  5'- gGC-CGGGCGCCGCCUUcGUGGacGGGAc -3'
miRNA:   3'- -CGuGUUUGUGGUGGGGaCACC--CCCUc -5'
5393 5' -56.6 NC_001798.1 + 7779 0.71 0.613792
Target:  5'- cCACGAccCACCGCCCCcGcUGGcGGGAGc -3'
miRNA:   3'- cGUGUUu-GUGGUGGGGaC-ACC-CCCUC- -5'
5393 5' -56.6 NC_001798.1 + 8266 0.74 0.488941
Target:  5'- aGCACGGaggaacugggguacuGCACUGCCCCccuccUGGGGGGGg -3'
miRNA:   3'- -CGUGUU---------------UGUGGUGGGGac---ACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 9153 0.7 0.674778
Target:  5'- gGCGC-GGCGCCGCCCgCgccgGGGGGcAGg -3'
miRNA:   3'- -CGUGuUUGUGGUGGG-Gaca-CCCCC-UC- -5'
5393 5' -56.6 NC_001798.1 + 12566 0.74 0.48515
Target:  5'- gGCGCGu-CGUCAUCCCggaUGUGGGGGAGa -3'
miRNA:   3'- -CGUGUuuGUGGUGGGG---ACACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 16159 0.66 0.887246
Target:  5'- gGCAcCGAGCGCCACgggcggCCCgcggGgaccgGGGGGAn -3'
miRNA:   3'- -CGU-GUUUGUGGUG------GGGa---Ca----CCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 16199 0.83 0.149412
Target:  5'- cGCACGGgccgcccuccGCACgCGCCgCCUGUGGGGGGGc -3'
miRNA:   3'- -CGUGUU----------UGUG-GUGG-GGACACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 18201 0.66 0.887246
Target:  5'- aCACAGGCGCgcaGCCUCgccGGGGGAc -3'
miRNA:   3'- cGUGUUUGUGg--UGGGGacaCCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 22581 0.72 0.59349
Target:  5'- gGCACAcGCACgCACCgCacggGGGGGAGa -3'
miRNA:   3'- -CGUGUuUGUG-GUGGgGaca-CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 23854 0.69 0.763305
Target:  5'- gGCugGgcGACAgCCGCCCCggccucUGGGGGGc -3'
miRNA:   3'- -CGugU--UUGU-GGUGGGGac----ACCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 25129 0.69 0.728644
Target:  5'- cGCGCGGACgccccccgccccgcgGCCGCCCCUcccGcGGGGGc- -3'
miRNA:   3'- -CGUGUUUG---------------UGGUGGGGA---CaCCCCCuc -5'
5393 5' -56.6 NC_001798.1 + 26269 0.67 0.841735
Target:  5'- cGCACucGCACCGCgCCUGcgcgcgcUGGGGccuGGGc -3'
miRNA:   3'- -CGUGuuUGUGGUGgGGAC-------ACCCC---CUC- -5'
5393 5' -56.6 NC_001798.1 + 27260 0.67 0.858267
Target:  5'- cGCGgGAcCGCaGCCCCgUGgcgcgcggGGGGGAGg -3'
miRNA:   3'- -CGUgUUuGUGgUGGGG-ACa-------CCCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.