miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5393 5' -56.6 NC_001798.1 + 16199 0.83 0.149412
Target:  5'- cGCACGGgccgcccuccGCACgCGCCgCCUGUGGGGGGGc -3'
miRNA:   3'- -CGUGUU----------UGUG-GUGG-GGACACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 29570 0.79 0.239519
Target:  5'- --gUAAAUGCCGCCCCUuUGGGGGAGu -3'
miRNA:   3'- cguGUUUGUGGUGGGGAcACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 105980 0.76 0.378899
Target:  5'- cCGCAgcGACGCCuacgACCCCUGgggaGGGGGGGu -3'
miRNA:   3'- cGUGU--UUGUGG----UGGGGACa---CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 112923 0.75 0.430103
Target:  5'- cCGCGGAUACUACCCggGUGGGGGu- -3'
miRNA:   3'- cGUGUUUGUGGUGGGgaCACCCCCuc -5'
5393 5' -56.6 NC_001798.1 + 67159 0.74 0.448053
Target:  5'- gGCGC-AGCACUcgugGCCCCaUGgaaagGGGGGAGg -3'
miRNA:   3'- -CGUGuUUGUGG----UGGGG-ACa----CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 12566 0.74 0.48515
Target:  5'- gGCGCGu-CGUCAUCCCggaUGUGGGGGAGa -3'
miRNA:   3'- -CGUGUuuGUGGUGGGG---ACACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 8266 0.74 0.488941
Target:  5'- aGCACGGaggaacugggguacuGCACUGCCCCccuccUGGGGGGGg -3'
miRNA:   3'- -CGUGUU---------------UGUGGUGGGGac---ACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 153047 0.73 0.522673
Target:  5'- cGCGCGguuggccGGCGCCGcCCCCUGgggcGGGcGGAGc -3'
miRNA:   3'- -CGUGU-------UUGUGGU-GGGGACa---CCC-CCUC- -5'
5393 5' -56.6 NC_001798.1 + 31523 0.72 0.543338
Target:  5'- cGCACAggUGuCCucggGCCCCgggGGGGGAGg -3'
miRNA:   3'- -CGUGUuuGU-GG----UGGGGacaCCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 22581 0.72 0.59349
Target:  5'- gGCACAcGCACgCACCgCacggGGGGGAGa -3'
miRNA:   3'- -CGUGUuUGUG-GUGGgGaca-CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 7779 0.71 0.613792
Target:  5'- cCACGAccCACCGCCCCcGcUGGcGGGAGc -3'
miRNA:   3'- cGUGUUu-GUGGUGGGGaC-ACC-CCCUC- -5'
5393 5' -56.6 NC_001798.1 + 150173 0.71 0.634149
Target:  5'- -gGCGGGcCGCCGCCCCcuccgcggcGUGGGGGGc -3'
miRNA:   3'- cgUGUUU-GUGGUGGGGa--------CACCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 121285 0.71 0.634149
Target:  5'- uGCGCG---GCCGCCCCgacgGUGGGGcGGc -3'
miRNA:   3'- -CGUGUuugUGGUGGGGa---CACCCC-CUc -5'
5393 5' -56.6 NC_001798.1 + 27513 0.7 0.672756
Target:  5'- cGCGCGggGGCGCCcgcgggaaggcaGCCCCgcggcgcgcgGGGGGAGg -3'
miRNA:   3'- -CGUGU--UUGUGG------------UGGGGaca-------CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 29995 0.7 0.674778
Target:  5'- gGC-CGuGCGCCGCCCCccgacccucUGGGGGGGc -3'
miRNA:   3'- -CGuGUuUGUGGUGGGGac-------ACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 93780 0.7 0.674778
Target:  5'- uCGCGAGCGCCGCCCg---GGGGGc- -3'
miRNA:   3'- cGUGUUUGUGGUGGGgacaCCCCCuc -5'
5393 5' -56.6 NC_001798.1 + 9153 0.7 0.674778
Target:  5'- gGCGC-GGCGCCGCCCgCgccgGGGGGcAGg -3'
miRNA:   3'- -CGUGuUUGUGGUGGG-Gaca-CCCCC-UC- -5'
5393 5' -56.6 NC_001798.1 + 34062 0.7 0.70392
Target:  5'- gGC-CGGGCACgCGCCUUUGggguuguUGGGGGGGg -3'
miRNA:   3'- -CGuGUUUGUG-GUGGGGAC-------ACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 3876 0.69 0.72472
Target:  5'- cGUAC-AGCACgCGCCCCgggGGcGGGGGg -3'
miRNA:   3'- -CGUGuUUGUG-GUGGGGacaCC-CCCUC- -5'
5393 5' -56.6 NC_001798.1 + 2077 0.69 0.72472
Target:  5'- cGCGCucGGCggACCACUCCg--GGGGGGGc -3'
miRNA:   3'- -CGUGu-UUG--UGGUGGGGacaCCCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.