miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5398 3' -54.2 NC_001798.1 + 154046 0.8 0.301113
Target:  5'- --cGCGCCGGGGCGCGGcacGgcUGGAGCg -3'
miRNA:   3'- ggaCGCGGCCUCGCGCC---CauAUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 148421 0.79 0.353426
Target:  5'- --gGCGCCGGGGCGgGGGUGggcacGGGCg -3'
miRNA:   3'- ggaCGCGGCCUCGCgCCCAUau---UUUG- -5'
5398 3' -54.2 NC_001798.1 + 21935 0.76 0.470188
Target:  5'- cCCUGCgGCCccgcccccuuugggcGGAGCGCGGG-AUGAcGCg -3'
miRNA:   3'- -GGACG-CGG---------------CCUCGCGCCCaUAUUuUG- -5'
5398 3' -54.2 NC_001798.1 + 95520 0.76 0.475875
Target:  5'- aCCcGCGCCcuGGAGCGCGGGcAUG--GCg -3'
miRNA:   3'- -GGaCGCGG--CCUCGCGCCCaUAUuuUG- -5'
5398 3' -54.2 NC_001798.1 + 36400 0.76 0.475875
Target:  5'- --gGCGCCGGGGCcccccugccggGCGGGgcgGUGGGGCg -3'
miRNA:   3'- ggaCGCGGCCUCG-----------CGCCCa--UAUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 27217 0.74 0.595383
Target:  5'- cCCcGgGgCGGGGCGCGGGg--GAGGCg -3'
miRNA:   3'- -GGaCgCgGCCUCGCGCCCauaUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 69512 0.74 0.595383
Target:  5'- --cGCGCCGGAGCGgGGcGUGgcccgcGAGCu -3'
miRNA:   3'- ggaCGCGGCCUCGCgCC-CAUau----UUUG- -5'
5398 3' -54.2 NC_001798.1 + 112830 0.74 0.595383
Target:  5'- --gGCGUCaGGGCGUGGGUGUGAAu- -3'
miRNA:   3'- ggaCGCGGcCUCGCGCCCAUAUUUug -5'
5398 3' -54.2 NC_001798.1 + 150907 0.74 0.615984
Target:  5'- cCCcGCGCCGGGGCGCucuucGGGgggcGGGCg -3'
miRNA:   3'- -GGaCGCGGCCUCGCG-----CCCauauUUUG- -5'
5398 3' -54.2 NC_001798.1 + 154094 0.73 0.634569
Target:  5'- --aGCGCCGGGGCGCGGccggcgccgGGGACc -3'
miRNA:   3'- ggaCGCGGCCUCGCGCCcaua-----UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 9164 0.73 0.677825
Target:  5'- gCCcGCGCCGGGGgGCaGGGUcucuGGCg -3'
miRNA:   3'- -GGaCGCGGCCUCgCG-CCCAuauuUUG- -5'
5398 3' -54.2 NC_001798.1 + 31331 0.73 0.68192
Target:  5'- cCCUGCgGCCGGcggggggcgcgcgcaGGCGCggcGGGUGggcgAAGACg -3'
miRNA:   3'- -GGACG-CGGCC---------------UCGCG---CCCAUa---UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 43965 0.72 0.688049
Target:  5'- --gGUGUCGGGGCGUGGGUcGUGGGGg -3'
miRNA:   3'- ggaCGCGGCCUCGCGCCCA-UAUUUUg -5'
5398 3' -54.2 NC_001798.1 + 22264 0.72 0.702282
Target:  5'- gCCcGCGCCGGGcgcuaaugagaugccGCGCGGGc--GGAGCg -3'
miRNA:   3'- -GGaCGCGGCCU---------------CGCGCCCauaUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 132138 0.72 0.708347
Target:  5'- cCCUGCGCCgccgGGGGCcgGCGGGc--GGGGCg -3'
miRNA:   3'- -GGACGCGG----CCUCG--CGCCCauaUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 55976 0.71 0.748076
Target:  5'- gCCcGCGCCGGGGaggcCGCGGGggcgaGGGGCu -3'
miRNA:   3'- -GGaCGCGGCCUC----GCGCCCaua--UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 15034 0.71 0.748076
Target:  5'- uCCUG-GCgGGAGCGUGGGgcggAUGGGc- -3'
miRNA:   3'- -GGACgCGgCCUCGCGCCCa---UAUUUug -5'
5398 3' -54.2 NC_001798.1 + 2328 0.71 0.757773
Target:  5'- gCCggGCGCCacGGCGCGGGga-AGAGCg -3'
miRNA:   3'- -GGa-CGCGGccUCGCGCCCauaUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 45397 0.71 0.767357
Target:  5'- cUCUG-GCCGGAGggacccgcacCGCGGGgcuUGGAGCg -3'
miRNA:   3'- -GGACgCGGCCUC----------GCGCCCau-AUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 36310 0.71 0.767357
Target:  5'- --gGCGgCGGGGCGCGGGcc-GGGGCc -3'
miRNA:   3'- ggaCGCgGCCUCGCGCCCauaUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.