miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5398 3' -54.2 NC_001798.1 + 1528 0.66 0.95926
Target:  5'- uCCaGCGCCGGgagcacGGCGCGgcGGUAcucgcgcgGGGACa -3'
miRNA:   3'- -GGaCGCGGCC------UCGCGC--CCAUa-------UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 2260 0.67 0.933088
Target:  5'- --cGcCGCCGGGGgGCGGGgc---GGCg -3'
miRNA:   3'- ggaC-GCGGCCUCgCGCCCauauuUUG- -5'
5398 3' -54.2 NC_001798.1 + 2328 0.71 0.757773
Target:  5'- gCCggGCGCCacGGCGCGGGga-AGAGCg -3'
miRNA:   3'- -GGa-CGCGGccUCGCGCCCauaUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 2635 0.67 0.933088
Target:  5'- cCCUG-GCCGGGGCG-GGGcucuu-GCg -3'
miRNA:   3'- -GGACgCGGCCUCGCgCCCauauuuUG- -5'
5398 3' -54.2 NC_001798.1 + 3005 0.7 0.813255
Target:  5'- cCCggGCGCgGGGGCGCGGcGggccGGGCu -3'
miRNA:   3'- -GGa-CGCGgCCUCGCGCC-CauauUUUG- -5'
5398 3' -54.2 NC_001798.1 + 3667 0.69 0.838857
Target:  5'- cCCggGCGCCac-GCGCGGGUucUGGAGCc -3'
miRNA:   3'- -GGa-CGCGGccuCGCGCCCAu-AUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 4218 0.66 0.942764
Target:  5'- gCUG-GCgGGGGCGCGGGc------- -3'
miRNA:   3'- gGACgCGgCCUCGCGCCCauauuuug -5'
5398 3' -54.2 NC_001798.1 + 5245 0.69 0.854981
Target:  5'- uCCUcgggGCGCgCGGGGCGgGGGgaaaggaggAGGACg -3'
miRNA:   3'- -GGA----CGCG-GCCUCGCgCCCaua------UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 6381 0.66 0.962808
Target:  5'- gCCgggGgGCCGGGGgGCcGGGgggccgggGGGACg -3'
miRNA:   3'- -GGa--CgCGGCCUCgCG-CCCaua-----UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 7012 0.67 0.938047
Target:  5'- --cGCGCCGGcGCuuaGGGUGUGAc-- -3'
miRNA:   3'- ggaCGCGGCCuCGcg-CCCAUAUUuug -5'
5398 3' -54.2 NC_001798.1 + 9164 0.73 0.677825
Target:  5'- gCCcGCGCCGGGGgGCaGGGUcucuGGCg -3'
miRNA:   3'- -GGaCGCGGCCUCgCG-CCCAuauuUUG- -5'
5398 3' -54.2 NC_001798.1 + 9663 0.69 0.870284
Target:  5'- gCC-GCGCgCGGAggGCGCGGG-AUGGGGg -3'
miRNA:   3'- -GGaCGCG-GCCU--CGCGCCCaUAUUUUg -5'
5398 3' -54.2 NC_001798.1 + 11648 0.68 0.89824
Target:  5'- cCCUGUGUCcccgGGGGCGgGGGUcgGGu-- -3'
miRNA:   3'- -GGACGCGG----CCUCGCgCCCAuaUUuug -5'
5398 3' -54.2 NC_001798.1 + 11779 0.66 0.942764
Target:  5'- gCUGCGCCGGAuCGCaGGa------- -3'
miRNA:   3'- gGACGCGGCCUcGCGcCCauauuuug -5'
5398 3' -54.2 NC_001798.1 + 14946 0.69 0.877613
Target:  5'- -aUGUGuuGGGGUGUGGGgcccGAGGCa -3'
miRNA:   3'- ggACGCggCCUCGCGCCCaua-UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 15034 0.71 0.748076
Target:  5'- uCCUG-GCgGGAGCGUGGGgcggAUGGGc- -3'
miRNA:   3'- -GGACgCGgCCUCGCGCCCa---UAUUUug -5'
5398 3' -54.2 NC_001798.1 + 19850 0.67 0.922441
Target:  5'- --cGCGCCcGGG-GCGGGUAggccAGAGCg -3'
miRNA:   3'- ggaCGCGGcCUCgCGCCCAUa---UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 21935 0.76 0.470188
Target:  5'- cCCUGCgGCCccgcccccuuugggcGGAGCGCGGG-AUGAcGCg -3'
miRNA:   3'- -GGACG-CGG---------------CCUCGCGCCCaUAUUuUG- -5'
5398 3' -54.2 NC_001798.1 + 22144 0.66 0.95926
Target:  5'- gCCggcggGgGCCaacgGGAGCGCGGGgcc--GGCa -3'
miRNA:   3'- -GGa----CgCGG----CCUCGCGCCCauauuUUG- -5'
5398 3' -54.2 NC_001798.1 + 22264 0.72 0.702282
Target:  5'- gCCcGCGCCGGGcgcuaaugagaugccGCGCGGGc--GGAGCg -3'
miRNA:   3'- -GGaCGCGGCCU---------------CGCGCCCauaUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.