miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5398 5' -60 NC_001798.1 + 18263 0.77 0.230099
Target:  5'- cGGGgGCCA-GGuACGCAUCCUCCGCgGg -3'
miRNA:   3'- -CCCaCGGUaCC-UGUGUAGGGGGCGgC- -5'
5398 5' -60 NC_001798.1 + 58930 0.75 0.28975
Target:  5'- aGG-GCCAcGGcCGC-UCCCCCGCCGa -3'
miRNA:   3'- cCCaCGGUaCCuGUGuAGGGGGCGGC- -5'
5398 5' -60 NC_001798.1 + 147166 0.74 0.316806
Target:  5'- cGGGUagccgcccggcGCCGggcGGAagGCGUCCCCCGCCc -3'
miRNA:   3'- -CCCA-----------CGGUa--CCUg-UGUAGGGGGCGGc -5'
5398 5' -60 NC_001798.1 + 107074 0.74 0.331032
Target:  5'- gGGGgagGCUGUGGGCccGCAagCCCCGCCc -3'
miRNA:   3'- -CCCa--CGGUACCUG--UGUagGGGGCGGc -5'
5398 5' -60 NC_001798.1 + 71412 0.73 0.368621
Target:  5'- gGGGUGCCcgcgcGGACGCc-CCCCgGCCa -3'
miRNA:   3'- -CCCACGGua---CCUGUGuaGGGGgCGGc -5'
5398 5' -60 NC_001798.1 + 2537 0.72 0.417445
Target:  5'- cGGG-GCgGgGGGCGCggCCCCCGCgGg -3'
miRNA:   3'- -CCCaCGgUaCCUGUGuaGGGGGCGgC- -5'
5398 5' -60 NC_001798.1 + 69207 0.72 0.44329
Target:  5'- gGGGUGCCGcaGGGCcaaaaggaGCG-CCCCgGCCGg -3'
miRNA:   3'- -CCCACGGUa-CCUG--------UGUaGGGGgCGGC- -5'
5398 5' -60 NC_001798.1 + 24717 0.72 0.44329
Target:  5'- cGGG-GCCcgcGGGCGCGgccgCCCCGCCGc -3'
miRNA:   3'- -CCCaCGGua-CCUGUGUag--GGGGCGGC- -5'
5398 5' -60 NC_001798.1 + 96156 0.71 0.461011
Target:  5'- cGGGUgacucGCCAUGGcggcCGCG-CCCCCgGCCGc -3'
miRNA:   3'- -CCCA-----CGGUACCu---GUGUaGGGGG-CGGC- -5'
5398 5' -60 NC_001798.1 + 19210 0.71 0.461011
Target:  5'- -cGUGUCGUGGACccCGUUCCCCGCa- -3'
miRNA:   3'- ccCACGGUACCUGu-GUAGGGGGCGgc -5'
5398 5' -60 NC_001798.1 + 124128 0.71 0.470011
Target:  5'- ---cGCUGUGG-CGCG-CCCCCGCCGu -3'
miRNA:   3'- cccaCGGUACCuGUGUaGGGGGCGGC- -5'
5398 5' -60 NC_001798.1 + 23340 0.71 0.4791
Target:  5'- ---cGCCGccGGCGCGcCCCCCGCCGg -3'
miRNA:   3'- cccaCGGUacCUGUGUaGGGGGCGGC- -5'
5398 5' -60 NC_001798.1 + 120217 0.71 0.4791
Target:  5'- cGG-GCCccGGGC-CGUuggCCCCCGCCGa -3'
miRNA:   3'- cCCaCGGuaCCUGuGUA---GGGGGCGGC- -5'
5398 5' -60 NC_001798.1 + 102516 0.71 0.488274
Target:  5'- gGGGUGuCCGUaGGcCACcgUCCCCGCgGc -3'
miRNA:   3'- -CCCAC-GGUA-CCuGUGuaGGGGGCGgC- -5'
5398 5' -60 NC_001798.1 + 115243 0.7 0.506864
Target:  5'- uGGGcGCCAUGGACcugACGUUcgUCCUGCCc -3'
miRNA:   3'- -CCCaCGGUACCUG---UGUAG--GGGGCGGc -5'
5398 5' -60 NC_001798.1 + 23798 0.7 0.516271
Target:  5'- cGGGgagccgugGCCcgGGGC-CGgcCCCCCGCCc -3'
miRNA:   3'- -CCCa-------CGGuaCCUGuGUa-GGGGGCGGc -5'
5398 5' -60 NC_001798.1 + 4122 0.7 0.53529
Target:  5'- cGGGcucgGCCG-GGGCGCcgCCCCCgggGCCc -3'
miRNA:   3'- -CCCa---CGGUaCCUGUGuaGGGGG---CGGc -5'
5398 5' -60 NC_001798.1 + 127941 0.7 0.539124
Target:  5'- cGGG-GCCccGGGCgaaaaggcccggcccGCGUCCCCgGCCc -3'
miRNA:   3'- -CCCaCGGuaCCUG---------------UGUAGGGGgCGGc -5'
5398 5' -60 NC_001798.1 + 23559 0.7 0.54393
Target:  5'- gGGGUGCCcgcgaGGGCcccggggGCGgcgCCCCgGCCGa -3'
miRNA:   3'- -CCCACGGua---CCUG-------UGUa--GGGGgCGGC- -5'
5398 5' -60 NC_001798.1 + 96995 0.7 0.55455
Target:  5'- cGGG-GCCA-GGGC-CGgcccgCCgCCCGCCGa -3'
miRNA:   3'- -CCCaCGGUaCCUGuGUa----GG-GGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.