miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5398 5' -60 NC_001798.1 + 499 0.68 0.642993
Target:  5'- ---cGCCccGGGgGCuUCCCCCGCCc -3'
miRNA:   3'- cccaCGGuaCCUgUGuAGGGGGCGGc -5'
5398 5' -60 NC_001798.1 + 1484 0.68 0.672577
Target:  5'- cGGGcGCCAUGG-CGUcgCCCgCGCCc -3'
miRNA:   3'- -CCCaCGGUACCuGUGuaGGGgGCGGc -5'
5398 5' -60 NC_001798.1 + 2537 0.72 0.417445
Target:  5'- cGGG-GCgGgGGGCGCggCCCCCGCgGg -3'
miRNA:   3'- -CCCaCGgUaCCUGUGuaGGGGGCGgC- -5'
5398 5' -60 NC_001798.1 + 3900 0.68 0.652873
Target:  5'- gGGGgccgGCCccGGGcCACggCuCCCCGCUGa -3'
miRNA:   3'- -CCCa---CGGuaCCU-GUGuaG-GGGGCGGC- -5'
5398 5' -60 NC_001798.1 + 4122 0.7 0.53529
Target:  5'- cGGGcucgGCCG-GGGCGCcgCCCCCgggGCCc -3'
miRNA:   3'- -CCCa---CGGUaCCUGUGuaGGGGG---CGGc -5'
5398 5' -60 NC_001798.1 + 4907 0.67 0.679447
Target:  5'- cGGGgccgccgGUCGUcuccgccgcggcccGGAgACGUCCCCCGUCc -3'
miRNA:   3'- -CCCa------CGGUA--------------CCUgUGUAGGGGGCGGc -5'
5398 5' -60 NC_001798.1 + 7437 0.66 0.785944
Target:  5'- cGGGUGCCcagGGAgccuagaccccCACGggaaCCCCGCg- -3'
miRNA:   3'- -CCCACGGua-CCU-----------GUGUag--GGGGCGgc -5'
5398 5' -60 NC_001798.1 + 15367 0.69 0.603468
Target:  5'- gGGGgaaucgGCCGUGGGCGCGgcggaggcgCCCaCCGgacCCGg -3'
miRNA:   3'- -CCCa-----CGGUACCUGUGUa--------GGG-GGC---GGC- -5'
5398 5' -60 NC_001798.1 + 18263 0.77 0.230099
Target:  5'- cGGGgGCCA-GGuACGCAUCCUCCGCgGg -3'
miRNA:   3'- -CCCaCGGUaCC-UGUGUAGGGGGCGgC- -5'
5398 5' -60 NC_001798.1 + 19210 0.71 0.461011
Target:  5'- -cGUGUCGUGGACccCGUUCCCCGCa- -3'
miRNA:   3'- ccCACGGUACCUGu-GUAGGGGGCGgc -5'
5398 5' -60 NC_001798.1 + 23340 0.71 0.4791
Target:  5'- ---cGCCGccGGCGCGcCCCCCGCCGg -3'
miRNA:   3'- cccaCGGUacCUGUGUaGGGGGCGGC- -5'
5398 5' -60 NC_001798.1 + 23559 0.7 0.54393
Target:  5'- gGGGUGCCcgcgaGGGCcccggggGCGgcgCCCCgGCCGa -3'
miRNA:   3'- -CCCACGGua---CCUG-------UGUa--GGGGgCGGC- -5'
5398 5' -60 NC_001798.1 + 23798 0.7 0.516271
Target:  5'- cGGGgagccgugGCCcgGGGC-CGgcCCCCCGCCc -3'
miRNA:   3'- -CCCa-------CGGuaCCUGuGUa-GGGGGCGGc -5'
5398 5' -60 NC_001798.1 + 24717 0.72 0.44329
Target:  5'- cGGG-GCCcgcGGGCGCGgccgCCCCGCCGc -3'
miRNA:   3'- -CCCaCGGua-CCUGUGUag--GGGGCGGC- -5'
5398 5' -60 NC_001798.1 + 25342 0.66 0.767045
Target:  5'- cGG-GCCGUGGccgagcuCACGgaccacccgcucuUCCCCgCGCCGu -3'
miRNA:   3'- cCCaCGGUACCu------GUGU-------------AGGGG-GCGGC- -5'
5398 5' -60 NC_001798.1 + 26437 0.66 0.785944
Target:  5'- uGGUGCUgcgcgacgacGcGGACGCGggcccgCCCCCGCa- -3'
miRNA:   3'- cCCACGG----------UaCCUGUGUa-----GGGGGCGgc -5'
5398 5' -60 NC_001798.1 + 27031 0.68 0.662736
Target:  5'- cGGGgGUCGggcgGGcgGCACGUCUCCCGCg- -3'
miRNA:   3'- -CCCaCGGUa---CC--UGUGUAGGGGGCGgc -5'
5398 5' -60 NC_001798.1 + 30409 0.69 0.574008
Target:  5'- cGG-GCCugAUGGACGCGgccacgCCCCCGgcCCGg -3'
miRNA:   3'- cCCaCGG--UACCUGUGUa-----GGGGGC--GGC- -5'
5398 5' -60 NC_001798.1 + 30552 0.68 0.632117
Target:  5'- -uGUGCCGUGuGCACGgacgagaUCgCCCCGCCc -3'
miRNA:   3'- ccCACGGUACcUGUGU-------AG-GGGGCGGc -5'
5398 5' -60 NC_001798.1 + 31549 0.66 0.74015
Target:  5'- gGGGaggucUGCCAcagucgucgGGGCGCGccgcgcgCCCCCGCgCGg -3'
miRNA:   3'- -CCC-----ACGGUa--------CCUGUGUa------GGGGGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.