miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5399 3' -55.5 NC_001798.1 + 91025 0.79 0.283115
Target:  5'- aGCccUCCGGGCCCaCGCGGAGgaCGUCGCg -3'
miRNA:   3'- -CGa-AGGCCCGGG-GUGCUUUg-GUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 13372 0.78 0.310694
Target:  5'- uGCUUUCGGGCCUCGucCGAAGCCccgCGCa -3'
miRNA:   3'- -CGAAGGCCCGGGGU--GCUUUGGua-GUG- -5'
5399 3' -55.5 NC_001798.1 + 96458 0.78 0.332688
Target:  5'- gGCUcCUGGGCCaCCugGAAACguUCGCg -3'
miRNA:   3'- -CGAaGGCCCGG-GGugCUUUGguAGUG- -5'
5399 3' -55.5 NC_001798.1 + 99749 0.76 0.396777
Target:  5'- uGCaucggCCGGGaugCCCGCGAGGCCAUCGa -3'
miRNA:   3'- -CGaa---GGCCCg--GGGUGCUUUGGUAGUg -5'
5399 3' -55.5 NC_001798.1 + 134152 0.76 0.405329
Target:  5'- --gUCUcGGCCCC-CGggGCCGUCGCg -3'
miRNA:   3'- cgaAGGcCCGGGGuGCuuUGGUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 61468 0.75 0.458976
Target:  5'- gGCcUCCGGGCCCCG-GAGGgcuacuuuacccCCAUCGCc -3'
miRNA:   3'- -CGaAGGCCCGGGGUgCUUU------------GGUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 150625 0.74 0.50643
Target:  5'- gGCUcCUGGGCCgCGCGggGCUGucUCGCg -3'
miRNA:   3'- -CGAaGGCCCGGgGUGCuuUGGU--AGUG- -5'
5399 3' -55.5 NC_001798.1 + 58379 0.74 0.516177
Target:  5'- ---aCCGGGCCUgACGGAGCCGcgucagacccUCGCg -3'
miRNA:   3'- cgaaGGCCCGGGgUGCUUUGGU----------AGUG- -5'
5399 3' -55.5 NC_001798.1 + 67268 0.74 0.525998
Target:  5'- --gUCUGGGuCCCCACGGAugUAgUCGCg -3'
miRNA:   3'- cgaAGGCCC-GGGGUGCUUugGU-AGUG- -5'
5399 3' -55.5 NC_001798.1 + 11044 0.74 0.545844
Target:  5'- ---cCCGGGCCCCGCccauCCAUUACc -3'
miRNA:   3'- cgaaGGCCCGGGGUGcuuuGGUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 58467 0.73 0.555857
Target:  5'- uGUUUUCGGGCCgUGCGGccCCGUCGCc -3'
miRNA:   3'- -CGAAGGCCCGGgGUGCUuuGGUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 1354 0.73 0.565923
Target:  5'- aGCUccgCCGGGCCgCCGCGcacGgCGUCGCg -3'
miRNA:   3'- -CGAa--GGCCCGG-GGUGCuu-UgGUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 149665 0.73 0.565923
Target:  5'- cGCcgggUCgCGGGCCCCGggcuCGggGCCGcccUCGCg -3'
miRNA:   3'- -CGa---AG-GCCCGGGGU----GCuuUGGU---AGUG- -5'
5399 3' -55.5 NC_001798.1 + 153022 0.73 0.586189
Target:  5'- gGCggagUCCGGGCCCgCGCGGcggcgcgcgguuGGCCggCGCc -3'
miRNA:   3'- -CGa---AGGCCCGGG-GUGCU------------UUGGuaGUG- -5'
5399 3' -55.5 NC_001798.1 + 73885 0.73 0.59026
Target:  5'- uCUUCUuuucgacgugGGGCCCCGCGAcgugcuguccgcggaGGCCAUCGa -3'
miRNA:   3'- cGAAGG----------CCCGGGGUGCU---------------UUGGUAGUg -5'
5399 3' -55.5 NC_001798.1 + 23661 0.72 0.616818
Target:  5'- cGCcgCCGGGCCCgCGCGGcgguGGCCGgcCGCg -3'
miRNA:   3'- -CGaaGGCCCGGG-GUGCU----UUGGUa-GUG- -5'
5399 3' -55.5 NC_001798.1 + 150562 0.72 0.616818
Target:  5'- aGCggcCCGGGgCCCGCGggGCgG-CGCg -3'
miRNA:   3'- -CGaa-GGCCCgGGGUGCuuUGgUaGUG- -5'
5399 3' -55.5 NC_001798.1 + 101473 0.72 0.647551
Target:  5'- uCUUCCGGGCCUuccguCGCGuguggGGGCCAUCGg -3'
miRNA:   3'- cGAAGGCCCGGG-----GUGC-----UUUGGUAGUg -5'
5399 3' -55.5 NC_001798.1 + 128958 0.72 0.647551
Target:  5'- cGCgUUCCGGGCCCgGagGAGGCgcuCGUCACc -3'
miRNA:   3'- -CG-AAGGCCCGGGgUg-CUUUG---GUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 86476 0.72 0.657782
Target:  5'- uGCUUCgggccgCGGGCCCC--GAGGCCAUCu- -3'
miRNA:   3'- -CGAAG------GCCCGGGGugCUUUGGUAGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.