miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5399 3' -55.5 NC_001798.1 + 1354 0.73 0.565923
Target:  5'- aGCUccgCCGGGCCgCCGCGcacGgCGUCGCg -3'
miRNA:   3'- -CGAa--GGCCCGG-GGUGCuu-UgGUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 1477 0.68 0.829733
Target:  5'- gGCgcgCCGGGCgCCAUGGcgucGCCcgCGCc -3'
miRNA:   3'- -CGaa-GGCCCGgGGUGCUu---UGGuaGUG- -5'
5399 3' -55.5 NC_001798.1 + 4124 0.7 0.738148
Target:  5'- gGCUcggCCGGggcgccGCCCC-CGggGCCcUCGCg -3'
miRNA:   3'- -CGAa--GGCC------CGGGGuGCuuUGGuAGUG- -5'
5399 3' -55.5 NC_001798.1 + 5739 0.66 0.909746
Target:  5'- ---cCCGGGgCCCGCGucauCCcgCGCu -3'
miRNA:   3'- cgaaGGCCCgGGGUGCuuu-GGuaGUG- -5'
5399 3' -55.5 NC_001798.1 + 7168 0.68 0.853296
Target:  5'- cGCUUCCgaccgacGGGCCCCcgcaccgggGCGGcGACCAUgAUc -3'
miRNA:   3'- -CGAAGG-------CCCGGGG---------UGCU-UUGGUAgUG- -5'
5399 3' -55.5 NC_001798.1 + 7601 0.71 0.678172
Target:  5'- ---cCCGGGCCCCaaaGCGu-GCCAacUCGCg -3'
miRNA:   3'- cgaaGGCCCGGGG---UGCuuUGGU--AGUG- -5'
5399 3' -55.5 NC_001798.1 + 11044 0.74 0.545844
Target:  5'- ---cCCGGGCCCCGCccauCCAUUACc -3'
miRNA:   3'- cgaaGGCCCGGGGUGcuuuGGUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 11234 0.67 0.897183
Target:  5'- gGCcgUCGGGCCaCUGCGggGCCGa--- -3'
miRNA:   3'- -CGaaGGCCCGG-GGUGCuuUGGUagug -5'
5399 3' -55.5 NC_001798.1 + 12191 0.69 0.81259
Target:  5'- uCUUCCacgaagcccugGGGCCCCACGGccCCGgcaucCACg -3'
miRNA:   3'- cGAAGG-----------CCCGGGGUGCUuuGGUa----GUG- -5'
5399 3' -55.5 NC_001798.1 + 13372 0.78 0.310694
Target:  5'- uGCUUUCGGGCCUCGucCGAAGCCccgCGCa -3'
miRNA:   3'- -CGAAGGCCCGGGGU--GCUUUGGua-GUG- -5'
5399 3' -55.5 NC_001798.1 + 18249 0.67 0.903582
Target:  5'- gGUUUCCgGGGgCCCG-GggGCCAgguaCGCa -3'
miRNA:   3'- -CGAAGG-CCCgGGGUgCuuUGGUa---GUG- -5'
5399 3' -55.5 NC_001798.1 + 19490 0.69 0.816074
Target:  5'- ---cCCGGGCCCCcgcuggccguuggcgACGAGuggccuCCGUCAUc -3'
miRNA:   3'- cgaaGGCCCGGGG---------------UGCUUu-----GGUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 20456 0.71 0.678172
Target:  5'- cGCaUCUGGGCCUgGCGAGcagagcGCCGgugCGCg -3'
miRNA:   3'- -CGaAGGCCCGGGgUGCUU------UGGUa--GUG- -5'
5399 3' -55.5 NC_001798.1 + 21801 0.69 0.776403
Target:  5'- --gUCCGGGCCCgCcucgggGCGGAGCCcgCGg -3'
miRNA:   3'- cgaAGGCCCGGG-G------UGCUUUGGuaGUg -5'
5399 3' -55.5 NC_001798.1 + 23296 0.69 0.821248
Target:  5'- cGCgacccCCGGcGCCCCGcCGAcACCAcCACc -3'
miRNA:   3'- -CGaa---GGCC-CGGGGU-GCUuUGGUaGUG- -5'
5399 3' -55.5 NC_001798.1 + 23661 0.72 0.616818
Target:  5'- cGCcgCCGGGCCCgCGCGGcgguGGCCGgcCGCg -3'
miRNA:   3'- -CGaaGGCCCGGG-GUGCU----UUGGUa-GUG- -5'
5399 3' -55.5 NC_001798.1 + 24711 0.69 0.776403
Target:  5'- cGCgcCCGGGgCCCGCGGGcgcggccgccccGCCG-CACg -3'
miRNA:   3'- -CGaaGGCCCgGGGUGCUU------------UGGUaGUG- -5'
5399 3' -55.5 NC_001798.1 + 24901 0.69 0.803769
Target:  5'- ---cCUGGGCCcggcgcugCCGCGGAGCCcgCGCc -3'
miRNA:   3'- cgaaGGCCCGG--------GGUGCUUUGGuaGUG- -5'
5399 3' -55.5 NC_001798.1 + 26191 0.7 0.717433
Target:  5'- cGCUggacggCCGGGCCgCCgccucgggcgcggGCGAcGCCAUgGCg -3'
miRNA:   3'- -CGAa-----GGCCCGG-GG-------------UGCUuUGGUAgUG- -5'
5399 3' -55.5 NC_001798.1 + 31210 0.66 0.926814
Target:  5'- cGCcccCUGGcGCCCCGCGGAGCagcaGCa -3'
miRNA:   3'- -CGaa-GGCC-CGGGGUGCUUUGguagUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.