miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5399 5' -60.2 NC_001798.1 + 108122 0.66 0.732574
Target:  5'- uGGGUGGUGAUGggggUCCUGguGggcguugcCGGGGg -3'
miRNA:   3'- -CCCGCCACUGCa---GGGACguC--------GUCCUu -5'
5399 5' -60.2 NC_001798.1 + 74537 0.66 0.722914
Target:  5'- gGGGCgcucuuugucGGUGugGUCCC--CAGgGGGGAc -3'
miRNA:   3'- -CCCG----------CCACugCAGGGacGUCgUCCUU- -5'
5399 5' -60.2 NC_001798.1 + 29919 0.66 0.713179
Target:  5'- cGGGCGGUGGg--CUCgGgGGCGGGAc -3'
miRNA:   3'- -CCCGCCACUgcaGGGaCgUCGUCCUu -5'
5399 5' -60.2 NC_001798.1 + 36424 0.66 0.713179
Target:  5'- gGGGCGGUGggGCGgggUCggggucGCGGCGGGGAa -3'
miRNA:   3'- -CCCGCCAC--UGCag-GGa-----CGUCGUCCUU- -5'
5399 5' -60.2 NC_001798.1 + 83854 0.66 0.713179
Target:  5'- cGGGCGGcgcUGGCGggCCCgagGCGGCGa--- -3'
miRNA:   3'- -CCCGCC---ACUGCa-GGGa--CGUCGUccuu -5'
5399 5' -60.2 NC_001798.1 + 147184 0.66 0.713179
Target:  5'- cGGGCGGaaGGCGUCCCccGCccGGCGGu-- -3'
miRNA:   3'- -CCCGCCa-CUGCAGGGa-CG--UCGUCcuu -5'
5399 5' -60.2 NC_001798.1 + 10977 0.66 0.703378
Target:  5'- cGGGCGGcGAC-UCCUUaaaugcGCGGCGGGc- -3'
miRNA:   3'- -CCCGCCaCUGcAGGGA------CGUCGUCCuu -5'
5399 5' -60.2 NC_001798.1 + 93986 0.66 0.703378
Target:  5'- aGGCGGUGcccACGgCCCUGgggaGGCuGGAGa -3'
miRNA:   3'- cCCGCCAC---UGCaGGGACg---UCGuCCUU- -5'
5399 5' -60.2 NC_001798.1 + 101840 0.66 0.683611
Target:  5'- cGGGgGGaGGCGugggUCCCgGCGGCGGcGGAg -3'
miRNA:   3'- -CCCgCCaCUGC----AGGGaCGUCGUC-CUU- -5'
5399 5' -60.2 NC_001798.1 + 90485 0.66 0.683611
Target:  5'- cGGGUGGUGGCGUcgacgcccCCCUcGUAcuuccugaucGCGGGGc -3'
miRNA:   3'- -CCCGCCACUGCA--------GGGA-CGU----------CGUCCUu -5'
5399 5' -60.2 NC_001798.1 + 12861 0.67 0.673662
Target:  5'- uGGUGGUGuCGgacagCuCCggcgGCAGCAGGGu -3'
miRNA:   3'- cCCGCCACuGCa----G-GGa---CGUCGUCCUu -5'
5399 5' -60.2 NC_001798.1 + 128522 0.67 0.673662
Target:  5'- cGGCGGUGAUGUUCggGCGGguGa-- -3'
miRNA:   3'- cCCGCCACUGCAGGgaCGUCguCcuu -5'
5399 5' -60.2 NC_001798.1 + 154291 0.67 0.673662
Target:  5'- cGGGCcGUGuuGCGggCCCUcuuaaggggcgGCGGCAGGAc -3'
miRNA:   3'- -CCCGcCAC--UGCa-GGGA-----------CGUCGUCCUu -5'
5399 5' -60.2 NC_001798.1 + 137150 0.67 0.66368
Target:  5'- uGGgGGUGACGUCaacGC-GCAGGAc -3'
miRNA:   3'- cCCgCCACUGCAGggaCGuCGUCCUu -5'
5399 5' -60.2 NC_001798.1 + 129276 0.67 0.66368
Target:  5'- --cUGGUGACGUUCCU-CGGCAGGc- -3'
miRNA:   3'- cccGCCACUGCAGGGAcGUCGUCCuu -5'
5399 5' -60.2 NC_001798.1 + 44281 0.67 0.662681
Target:  5'- gGGGCGGUGcUG-CCgCUGCcgaugcgGGCGGGGg -3'
miRNA:   3'- -CCCGCCACuGCaGG-GACG-------UCGUCCUu -5'
5399 5' -60.2 NC_001798.1 + 154409 0.67 0.661681
Target:  5'- cGGGCGGcGGCGgcgggcggGCGGCAGGGc -3'
miRNA:   3'- -CCCGCCaCUGCaggga---CGUCGUCCUu -5'
5399 5' -60.2 NC_001798.1 + 71 0.67 0.661681
Target:  5'- cGGGCGGcGGCGgcgggcggGCGGCAGGGc -3'
miRNA:   3'- -CCCGCCaCUGCaggga---CGUCGUCCUu -5'
5399 5' -60.2 NC_001798.1 + 27038 0.67 0.63362
Target:  5'- cGGGCGGgcgGcACGUCuCCcGCGcccGCGGGGGg -3'
miRNA:   3'- -CCCGCCa--C-UGCAG-GGaCGU---CGUCCUU- -5'
5399 5' -60.2 NC_001798.1 + 2961 0.67 0.63362
Target:  5'- aGGCGGggcGCGUCggCgUGCGGCGGGGc -3'
miRNA:   3'- cCCGCCac-UGCAG--GgACGUCGUCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.