miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5405 3' -61.3 NC_001798.1 + 150276 0.85 0.045972
Target:  5'- cGCGUCGGUCGCGCcuGCCCGGCCCa -3'
miRNA:   3'- cUGCGGCCGGUGUGuuUGGGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 78569 0.82 0.071695
Target:  5'- aGGCGCUGGCCGCGCGcgagcGCCgGGCCCa -3'
miRNA:   3'- -CUGCGGCCGGUGUGUu----UGGgCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 30419 0.81 0.085915
Target:  5'- gGACG-CGGCCACGCccccGGCCCGGCCCc -3'
miRNA:   3'- -CUGCgGCCGGUGUGu---UUGGGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 27945 0.81 0.095209
Target:  5'- cGGCGCCGGCCGCGC---CCCGGCgCUc -3'
miRNA:   3'- -CUGCGGCCGGUGUGuuuGGGCCGgGA- -5'
5405 3' -61.3 NC_001798.1 + 48165 0.8 0.100206
Target:  5'- gGGCGCCuggcGGCCACGCAcGCCCGGCUg- -3'
miRNA:   3'- -CUGCGG----CCGGUGUGUuUGGGCCGGga -5'
5405 3' -61.3 NC_001798.1 + 103015 0.8 0.108167
Target:  5'- uGCGcCCGGCCAgCGCGAGCUCGGCCUc -3'
miRNA:   3'- cUGC-GGCCGGU-GUGUUUGGGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 71629 0.79 0.122765
Target:  5'- aGACGCUGGCgCGCAUcauGGGCCCGGCCg- -3'
miRNA:   3'- -CUGCGGCCG-GUGUG---UUUGGGCCGGga -5'
5405 3' -61.3 NC_001798.1 + 28996 0.78 0.13139
Target:  5'- cGGCGCCGGCCaaccgcgcgccgccGCGCGGGCCCGGaCuCCg -3'
miRNA:   3'- -CUGCGGCCGG--------------UGUGUUUGGGCC-G-GGa -5'
5405 3' -61.3 NC_001798.1 + 35441 0.78 0.135739
Target:  5'- aGGCGUgGGCCGCugGcGCCgCGGCCCg -3'
miRNA:   3'- -CUGCGgCCGGUGugUuUGG-GCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 12276 0.78 0.139175
Target:  5'- --gGCCGGUgGCGCAGACCCacaGGCCCa -3'
miRNA:   3'- cugCGGCCGgUGUGUUUGGG---CCGGGa -5'
5405 3' -61.3 NC_001798.1 + 81447 0.78 0.14269
Target:  5'- cGACGCCGGCggcccCACGCccAAUCCGGCCCc -3'
miRNA:   3'- -CUGCGGCCG-----GUGUGu-UUGGGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 76001 0.78 0.146285
Target:  5'- gGGCGCCGGCgGCAgGGcCCCGuGCCCg -3'
miRNA:   3'- -CUGCGGCCGgUGUgUUuGGGC-CGGGa -5'
5405 3' -61.3 NC_001798.1 + 116395 0.77 0.157574
Target:  5'- cGACgGCCGGCUgcuGCACAAcACCCaGGCCCg -3'
miRNA:   3'- -CUG-CGGCCGG---UGUGUU-UGGG-CCGGGa -5'
5405 3' -61.3 NC_001798.1 + 127958 0.77 0.157574
Target:  5'- aGGC-CCGGCC-CGCGucCCCGGCCCUc -3'
miRNA:   3'- -CUGcGGCCGGuGUGUuuGGGCCGGGA- -5'
5405 3' -61.3 NC_001798.1 + 79271 0.77 0.169644
Target:  5'- cGACGCggCGGCCGCG--GACCUGGCCCc -3'
miRNA:   3'- -CUGCG--GCCGGUGUguUUGGGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 73275 0.77 0.171314
Target:  5'- aGAUGCCGGCgGuagcacccccgaaccCACGAcACCCGGCCCa -3'
miRNA:   3'- -CUGCGGCCGgU---------------GUGUU-UGGGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 87727 0.76 0.17771
Target:  5'- aGCGCCGGCCcccgccgGCcCGAACCCcgcGGCCCUg -3'
miRNA:   3'- cUGCGGCCGG-------UGuGUUUGGG---CCGGGA- -5'
5405 3' -61.3 NC_001798.1 + 21759 0.76 0.18702
Target:  5'- gGACGCCGGCCcuuuauguGCGCGAGgaaCGGCCCg -3'
miRNA:   3'- -CUGCGGCCGG--------UGUGUUUgg-GCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 66808 0.76 0.196284
Target:  5'- cGCGCgGGuCCGuCGCgGAGCCCGGCCCg -3'
miRNA:   3'- cUGCGgCC-GGU-GUG-UUUGGGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 150375 0.75 0.210929
Target:  5'- --gGCgGGCgGCGCGGGCCCGGCCg- -3'
miRNA:   3'- cugCGgCCGgUGUGUUUGGGCCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.