miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5405 3' -61.3 NC_001798.1 + 136 0.67 0.607716
Target:  5'- --aGCCGGCCGCucccccGCGGGCgCCGcCCCUc -3'
miRNA:   3'- cugCGGCCGGUG------UGUUUG-GGCcGGGA- -5'
5405 3' -61.3 NC_001798.1 + 1318 0.66 0.686761
Target:  5'- aGCGCCcGCgCGCAgAAcucccGCCgCGGCCCg -3'
miRNA:   3'- cUGCGGcCG-GUGUgUU-----UGG-GCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 1390 0.69 0.520168
Target:  5'- aGCGCCacguagacgGGCCGCAgCGGcgcGCCCaGGCCCc -3'
miRNA:   3'- cUGCGG---------CCGGUGU-GUU---UGGG-CCGGGa -5'
5405 3' -61.3 NC_001798.1 + 1479 0.71 0.395667
Target:  5'- cGCGCCGGgCGCcaugGCGucGCCCGcGCCCg -3'
miRNA:   3'- cUGCGGCCgGUG----UGUu-UGGGC-CGGGa -5'
5405 3' -61.3 NC_001798.1 + 1663 0.71 0.385908
Target:  5'- aGGCGCgcgugcgCGGCCuccacgcGCGCGAAgaccCCCGGCCCg -3'
miRNA:   3'- -CUGCG-------GCCGG-------UGUGUUU----GGGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 1889 0.69 0.472742
Target:  5'- aGGCGCCGGCCAgcagcccCAgGAACUccaCGGCgCCg -3'
miRNA:   3'- -CUGCGGCCGGU-------GUgUUUGG---GCCG-GGa -5'
5405 3' -61.3 NC_001798.1 + 2021 0.7 0.446764
Target:  5'- cGugGCgGGCC-CGCAGAgCCGguuGCCCa -3'
miRNA:   3'- -CugCGgCCGGuGUGUUUgGGC---CGGGa -5'
5405 3' -61.3 NC_001798.1 + 2417 0.66 0.676947
Target:  5'- gGGCGCCGGCgugugGCugGGcCCCGGCg-- -3'
miRNA:   3'- -CUGCGGCCGg----UGugUUuGGGCCGgga -5'
5405 3' -61.3 NC_001798.1 + 2451 0.67 0.597837
Target:  5'- cGGCGCCaGCCGCccuGCGggUCgGGgCCCUc -3'
miRNA:   3'- -CUGCGGcCGGUG---UGUuuGGgCC-GGGA- -5'
5405 3' -61.3 NC_001798.1 + 2528 0.7 0.455634
Target:  5'- cGGCGUCGGCgGgGCGgggGGCgCGGCCCc -3'
miRNA:   3'- -CUGCGGCCGgUgUGU---UUGgGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 2701 0.66 0.667099
Target:  5'- --aGUCGGCCGCggcgACGGugUCGGCCa- -3'
miRNA:   3'- cugCGGCCGGUG----UGUUugGGCCGGga -5'
5405 3' -61.3 NC_001798.1 + 2793 0.72 0.348496
Target:  5'- aGGCGCgGGCUcCGCGGcagcGCCgGGCCCa -3'
miRNA:   3'- -CUGCGgCCGGuGUGUU----UGGgCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 2877 0.68 0.578158
Target:  5'- -cCGCCGGCCACGCGcagguCCCcGCgCa -3'
miRNA:   3'- cuGCGGCCGGUGUGUuu---GGGcCGgGa -5'
5405 3' -61.3 NC_001798.1 + 2986 0.71 0.387524
Target:  5'- gGGCgGCCGGCC-CGCGGGCCCcgGGCgCg -3'
miRNA:   3'- -CUG-CGGCCGGuGUGUUUGGG--CCGgGa -5'
5405 3' -61.3 NC_001798.1 + 3144 0.68 0.578158
Target:  5'- cGCGCCGGCCGcCGCcaccacCgCCGGCgCCg -3'
miRNA:   3'- cUGCGGCCGGU-GUGuuu---G-GGCCG-GGa -5'
5405 3' -61.3 NC_001798.1 + 3508 0.67 0.587983
Target:  5'- cACGgCGGCCGcCACGugcGCCaGGCCCc -3'
miRNA:   3'- cUGCgGCCGGU-GUGUu--UGGgCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 3620 0.69 0.48832
Target:  5'- cGCGCCGcGCCcgagauccggaaGCAGGCCUGGUCCa -3'
miRNA:   3'- cUGCGGC-CGGug----------UGUUUGGGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 3792 0.73 0.298716
Target:  5'- gGGCGCCcgaGGCCu--CGAACCgGGCCCg -3'
miRNA:   3'- -CUGCGG---CCGGuguGUUUGGgCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 3900 0.68 0.548925
Target:  5'- gGGgGCCGGCC-C-CGGGCCaCGGCUCc -3'
miRNA:   3'- -CUgCGGCCGGuGuGUUUGG-GCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 3960 0.67 0.636434
Target:  5'- aGGCGCCggaGGCCGCGucggcguccagcuCGAccgccggggccGCCCGGCCg- -3'
miRNA:   3'- -CUGCGG---CCGGUGU-------------GUU-----------UGGGCCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.