miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5405 5' -54 NC_001798.1 + 95362 0.78 0.386081
Target:  5'- uCCGGGGCAucauuGCggaggGCGGGgcgGCGGUCGc -3'
miRNA:   3'- -GGUCCUGUu----UGaa---CGCCCa--CGCCAGU- -5'
5405 5' -54 NC_001798.1 + 104042 0.74 0.636635
Target:  5'- aCAGGGguGGUguuugUGCGGGUGCGGUUg -3'
miRNA:   3'- gGUCCUguUUGa----ACGCCCACGCCAGu -5'
5405 5' -54 NC_001798.1 + 150001 0.73 0.646959
Target:  5'- gCCGGGGCGAGCggcccGUGGccGCGGUCGc -3'
miRNA:   3'- -GGUCCUGUUUGaa---CGCCcaCGCCAGU- -5'
5405 5' -54 NC_001798.1 + 11970 0.73 0.688049
Target:  5'- uCCAGGGCGGAUagGCGGGgcUGUGGg-- -3'
miRNA:   3'- -GGUCCUGUUUGaaCGCCC--ACGCCagu -5'
5405 5' -54 NC_001798.1 + 103162 0.72 0.727387
Target:  5'- aCAGGGCc-ACgUGCgcaaacaGGGUGCGGUCGg -3'
miRNA:   3'- gGUCCUGuuUGaACG-------CCCACGCCAGU- -5'
5405 5' -54 NC_001798.1 + 8790 0.72 0.738276
Target:  5'- gCCGGGACGGGCgaggccGCGGGguaaaGCGG-CAc -3'
miRNA:   3'- -GGUCCUGUUUGaa----CGCCCa----CGCCaGU- -5'
5405 5' -54 NC_001798.1 + 15682 0.72 0.738276
Target:  5'- gUCGGGGgGAguaguGgUUGCGGGgGCGGUCGg -3'
miRNA:   3'- -GGUCCUgUU-----UgAACGCCCaCGCCAGU- -5'
5405 5' -54 NC_001798.1 + 112447 0.71 0.763538
Target:  5'- aCGGGGCGGACUUGgGGGggggaauagugggGUGGUgGg -3'
miRNA:   3'- gGUCCUGUUUGAACgCCCa------------CGCCAgU- -5'
5405 5' -54 NC_001798.1 + 39419 0.71 0.786148
Target:  5'- aCCGGGGCGcGGCcguccgcgUGCGGG-GgGGUCAg -3'
miRNA:   3'- -GGUCCUGU-UUGa-------ACGCCCaCgCCAGU- -5'
5405 5' -54 NC_001798.1 + 148424 0.71 0.786148
Target:  5'- gCCGGGGCGggggugggcacgGGCguaagUGCGGGUGCaugccucgGGUCu -3'
miRNA:   3'- -GGUCCUGU------------UUGa----ACGCCCACG--------CCAGu -5'
5405 5' -54 NC_001798.1 + 152992 0.7 0.813255
Target:  5'- aCCGGGA--AGCcggcGCGGG-GCGGUCGc -3'
miRNA:   3'- -GGUCCUguUUGaa--CGCCCaCGCCAGU- -5'
5405 5' -54 NC_001798.1 + 117290 0.7 0.838857
Target:  5'- uCCAGGugGcccgccacgaAACggGCGGG-GgGGUCAa -3'
miRNA:   3'- -GGUCCugU----------UUGaaCGCCCaCgCCAGU- -5'
5405 5' -54 NC_001798.1 + 75868 0.7 0.847018
Target:  5'- cCCGGGGCGAAgagaUGCGGGUcgagGCGGa-- -3'
miRNA:   3'- -GGUCCUGUUUga--ACGCCCA----CGCCagu -5'
5405 5' -54 NC_001798.1 + 153070 0.69 0.862739
Target:  5'- cCUGGGGCGGGCggagcgGCGGG-GCGG-CGc -3'
miRNA:   3'- -GGUCCUGUUUGaa----CGCCCaCGCCaGU- -5'
5405 5' -54 NC_001798.1 + 85920 0.69 0.870284
Target:  5'- aCCgAGGGCAAGC--GCGGGgGCGGa-- -3'
miRNA:   3'- -GG-UCCUGUUUGaaCGCCCaCGCCagu -5'
5405 5' -54 NC_001798.1 + 96032 0.69 0.884718
Target:  5'- gCGGGGCGGGCggGCGGGcGaCGGgCAu -3'
miRNA:   3'- gGUCCUGUUUGaaCGCCCaC-GCCaGU- -5'
5405 5' -54 NC_001798.1 + 27218 0.69 0.884718
Target:  5'- cCCGGGGCGGGgc-GCGGGggagGCGGcCGc -3'
miRNA:   3'- -GGUCCUGUUUgaaCGCCCa---CGCCaGU- -5'
5405 5' -54 NC_001798.1 + 53939 0.69 0.887496
Target:  5'- aCCAcGGGCucgaugcagugcauGGCccUGCGGGcgGCGGUCAg -3'
miRNA:   3'- -GGU-CCUGu-------------UUGa-ACGCCCa-CGCCAGU- -5'
5405 5' -54 NC_001798.1 + 12032 0.68 0.891595
Target:  5'- gCGGGGCg-----GCGGGggcaUGCGGUCAg -3'
miRNA:   3'- gGUCCUGuuugaaCGCCC----ACGCCAGU- -5'
5405 5' -54 NC_001798.1 + 81270 0.68 0.90465
Target:  5'- gCGGGAC---CUUGCGGGgggggaugGCGGaUCGg -3'
miRNA:   3'- gGUCCUGuuuGAACGCCCa-------CGCC-AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.