miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5405 5' -54 NC_001798.1 + 2559 0.66 0.95926
Target:  5'- gCGGGAgGGGCggccGCGGG-GCGGg-- -3'
miRNA:   3'- gGUCCUgUUUGaa--CGCCCaCGCCagu -5'
5405 5' -54 NC_001798.1 + 2950 0.67 0.938047
Target:  5'- gCCAGG-CGcGCagGCGGG-GCGcGUCGg -3'
miRNA:   3'- -GGUCCuGUuUGaaCGCCCaCGC-CAGU- -5'
5405 5' -54 NC_001798.1 + 8790 0.72 0.738276
Target:  5'- gCCGGGACGGGCgaggccGCGGGguaaaGCGG-CAc -3'
miRNA:   3'- -GGUCCUGUUUGaa----CGCCCa----CGCCaGU- -5'
5405 5' -54 NC_001798.1 + 11970 0.73 0.688049
Target:  5'- uCCAGGGCGGAUagGCGGGgcUGUGGg-- -3'
miRNA:   3'- -GGUCCUGUUUGaaCGCCC--ACGCCagu -5'
5405 5' -54 NC_001798.1 + 12032 0.68 0.891595
Target:  5'- gCGGGGCg-----GCGGGggcaUGCGGUCAg -3'
miRNA:   3'- gGUCCUGuuugaaCGCCC----ACGCCAGU- -5'
5405 5' -54 NC_001798.1 + 12337 0.66 0.957778
Target:  5'- aCCGGGAuCGGACgggucgagguggcUGUGGGcGCGGUg- -3'
miRNA:   3'- -GGUCCU-GUUUGa------------ACGCCCaCGCCAgu -5'
5405 5' -54 NC_001798.1 + 15211 0.68 0.908382
Target:  5'- gCCGGGGgGAGCguccgcggguccgUGUGGGUGCG-UCu -3'
miRNA:   3'- -GGUCCUgUUUGa------------ACGCCCACGCcAGu -5'
5405 5' -54 NC_001798.1 + 15682 0.72 0.738276
Target:  5'- gUCGGGGgGAguaguGgUUGCGGGgGCGGUCGg -3'
miRNA:   3'- -GGUCCUgUU-----UgAACGCCCaCGCCAGU- -5'
5405 5' -54 NC_001798.1 + 20619 0.66 0.955486
Target:  5'- uUCGGGGuCGcuugGAUUUGCGGGgggGUGuGUCAa -3'
miRNA:   3'- -GGUCCU-GU----UUGAACGCCCa--CGC-CAGU- -5'
5405 5' -54 NC_001798.1 + 26941 0.66 0.966136
Target:  5'- gCGGGGuCGGGCggGCGGGggucggGCGGgCGg -3'
miRNA:   3'- gGUCCU-GUUUGaaCGCCCa-----CGCCaGU- -5'
5405 5' -54 NC_001798.1 + 27218 0.69 0.884718
Target:  5'- cCCGGGGCGGGgc-GCGGGggagGCGGcCGc -3'
miRNA:   3'- -GGUCCUGUUUgaaCGCCCa---CGCCaGU- -5'
5405 5' -54 NC_001798.1 + 27338 0.66 0.966136
Target:  5'- gCGGGgaaccguguGCGGGCggGCGGGUGCuuGGUgCAa -3'
miRNA:   3'- gGUCC---------UGUUUGaaCGCCCACG--CCA-GU- -5'
5405 5' -54 NC_001798.1 + 27700 0.66 0.95926
Target:  5'- cCCGGGGgAAAagagGCGGG-GCGGg-- -3'
miRNA:   3'- -GGUCCUgUUUgaa-CGCCCaCGCCagu -5'
5405 5' -54 NC_001798.1 + 36403 0.67 0.922441
Target:  5'- gCCGGGGCcccccuGCcggGCGGG-GCGGUgGg -3'
miRNA:   3'- -GGUCCUGuu----UGaa-CGCCCaCGCCAgU- -5'
5405 5' -54 NC_001798.1 + 36841 0.66 0.966136
Target:  5'- -gGGGACcGGCUgugugGUGGGUGgGGgaggCAc -3'
miRNA:   3'- ggUCCUGuUUGAa----CGCCCACgCCa---GU- -5'
5405 5' -54 NC_001798.1 + 39419 0.71 0.786148
Target:  5'- aCCGGGGCGcGGCcguccgcgUGCGGG-GgGGUCAg -3'
miRNA:   3'- -GGUCCUGU-UUGa-------ACGCCCaCgCCAGU- -5'
5405 5' -54 NC_001798.1 + 53939 0.69 0.887496
Target:  5'- aCCAcGGGCucgaugcagugcauGGCccUGCGGGcgGCGGUCAg -3'
miRNA:   3'- -GGU-CCUGu-------------UUGa-ACGCCCa-CGCCAGU- -5'
5405 5' -54 NC_001798.1 + 74534 0.66 0.962808
Target:  5'- cUCGGGGCGcuCuUUGUcGGUGUGGUCc -3'
miRNA:   3'- -GGUCCUGUuuG-AACGcCCACGCCAGu -5'
5405 5' -54 NC_001798.1 + 75868 0.7 0.847018
Target:  5'- cCCGGGGCGAAgagaUGCGGGUcgagGCGGa-- -3'
miRNA:   3'- -GGUCCUGUUUga--ACGCCCA----CGCCagu -5'
5405 5' -54 NC_001798.1 + 81270 0.68 0.90465
Target:  5'- gCGGGAC---CUUGCGGGgggggaugGCGGaUCGg -3'
miRNA:   3'- gGUCCUGuuuGAACGCCCa-------CGCC-AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.