miRNA display CGI


Results 41 - 60 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 25495 0.7 0.543847
Target:  5'- uCGgGCCCGCu-GCGcCGCGCGGCg-- -3'
miRNA:   3'- -GCgCGGGCGcuUGUuGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 25533 0.66 0.822071
Target:  5'- gGUGCCCGacccggaGGACGuGCGCGUGGUgauccUCUa -3'
miRNA:   3'- gCGCGGGCg------CUUGU-UGUGCGCCG-----AGA- -5'
5406 3' -58.9 NC_001798.1 + 25892 0.68 0.661982
Target:  5'- aCGgGCCCGUGGucucgcgGCAGCACGCcuaccuGGC-CUg -3'
miRNA:   3'- -GCgCGGGCGCU-------UGUUGUGCG------CCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 26032 0.66 0.796318
Target:  5'- uCGCGCgCGUGGAgGccgcGCACGCGcGC-CUg -3'
miRNA:   3'- -GCGCGgGCGCUUgU----UGUGCGC-CGaGA- -5'
5406 3' -58.9 NC_001798.1 + 26279 0.68 0.662979
Target:  5'- cCGCGCCUGCGcGCGcuggggccuggGCGCGCcGCUg- -3'
miRNA:   3'- -GCGCGGGCGCuUGU-----------UGUGCGcCGAga -5'
5406 3' -58.9 NC_001798.1 + 26496 0.66 0.811081
Target:  5'- gCGgGCCgCGCGGggacggugcuggccGCGGCGgGCGGCg-- -3'
miRNA:   3'- -GCgCGG-GCGCU--------------UGUUGUgCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 26582 0.68 0.662979
Target:  5'- gCGCgaGCCCGUGGACAugGaCGCGGagCUg -3'
miRNA:   3'- -GCG--CGGGCGCUUGUugU-GCGCCgaGA- -5'
5406 3' -58.9 NC_001798.1 + 27057 0.78 0.211321
Target:  5'- cCGCGCCCGCGGGgGGuCugG-GGCUCUg -3'
miRNA:   3'- -GCGCGGGCGCUUgUU-GugCgCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 27254 0.66 0.813641
Target:  5'- gGCGgCCGCGGgaccGCAGCccCGUGGCg-- -3'
miRNA:   3'- gCGCgGGCGCU----UGUUGu-GCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 27521 0.77 0.227067
Target:  5'- gGCGCCCGCGGgaagGCAGCccCGCGGCg-- -3'
miRNA:   3'- gCGCGGGCGCU----UGUUGu-GCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 27565 0.72 0.441271
Target:  5'- gGCGCCCGCGGGgGA-GCGgcCGGCUCc -3'
miRNA:   3'- gCGCGGGCGCUUgUUgUGC--GCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 27840 0.66 0.813641
Target:  5'- gCGUGCCgaGUGAACucucccgccccGACGCGCuccGGCUCc -3'
miRNA:   3'- -GCGCGGg-CGCUUG-----------UUGUGCG---CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 28115 0.67 0.721064
Target:  5'- gGUGCCCcagGCGGACGACagcgacgACGCGGaCUa- -3'
miRNA:   3'- gCGCGGG---CGCUUGUUG-------UGCGCC-GAga -5'
5406 3' -58.9 NC_001798.1 + 28377 0.7 0.563417
Target:  5'- -cCGCCCGCGGACGcgcCGCGCGGg--- -3'
miRNA:   3'- gcGCGGGCGCUUGUu--GUGCGCCgaga -5'
5406 3' -58.9 NC_001798.1 + 28788 0.69 0.613032
Target:  5'- gGCGgCgGCG-GCGGCGCGCGGgUCc -3'
miRNA:   3'- gCGCgGgCGCuUGUUGUGCGCCgAGa -5'
5406 3' -58.9 NC_001798.1 + 29534 0.68 0.672928
Target:  5'- cCGCcCCCGCc-GgGGCGCGCGGCUa- -3'
miRNA:   3'- -GCGcGGGCGcuUgUUGUGCGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 29650 0.66 0.813641
Target:  5'- cCG-GCaCUGCGAGCGACGgaGCGGCg-- -3'
miRNA:   3'- -GCgCG-GGCGCUUGUUGUg-CGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 31218 0.73 0.398379
Target:  5'- gGCGcCCCGCgGAGCAGCAgcaGCGGCg-- -3'
miRNA:   3'- gCGC-GGGCG-CUUGUUGUg--CGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 31401 0.69 0.603055
Target:  5'- aCGCccCCCGCGAGaCAGCcccGCGCGGCcCa -3'
miRNA:   3'- -GCGc-GGGCGCUU-GUUG---UGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 31478 0.66 0.822071
Target:  5'- cCGC-CCCGCGGGCccCGgGCcGCUCUc -3'
miRNA:   3'- -GCGcGGGCGCUUGuuGUgCGcCGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.