miRNA display CGI


Results 21 - 40 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 8704 0.67 0.731665
Target:  5'- gGCGCCUuaGGACcgacuGCugGCGGCcCa -3'
miRNA:   3'- gCGCGGGcgCUUGu----UGugCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 9166 0.68 0.712324
Target:  5'- cCGCGCCgGgGGGCAGggucuCugGCGGgUCc -3'
miRNA:   3'- -GCGCGGgCgCUUGUU-----GugCGCCgAGa -5'
5406 3' -58.9 NC_001798.1 + 9569 0.66 0.822071
Target:  5'- aGCGCCUGCGccAGCAGgucaugcacgccCACGCGGaCa-- -3'
miRNA:   3'- gCGCGGGCGC--UUGUU------------GUGCGCC-Gaga -5'
5406 3' -58.9 NC_001798.1 + 9653 0.66 0.805054
Target:  5'- gGCGCa-GCGGGCcGCGCGCGGagggCg -3'
miRNA:   3'- gCGCGggCGCUUGuUGUGCGCCga--Ga -5'
5406 3' -58.9 NC_001798.1 + 17119 0.74 0.37396
Target:  5'- gGcCGCCCGCGAGCggUaguGCGCGGUg-- -3'
miRNA:   3'- gC-GCGGGCGCUUGuuG---UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 19407 0.68 0.682845
Target:  5'- aGCGCCCGUGuuuuACGuGCAUGgGGCg-- -3'
miRNA:   3'- gCGCGGGCGCu---UGU-UGUGCgCCGaga -5'
5406 3' -58.9 NC_001798.1 + 21838 0.67 0.760039
Target:  5'- gCGgGCCC-CGGGCAGgGCGCcaguGCUCg -3'
miRNA:   3'- -GCgCGGGcGCUUGUUgUGCGc---CGAGa -5'
5406 3' -58.9 NC_001798.1 + 21975 0.67 0.760039
Target:  5'- gCGgGCCC-CGGGCAGgGCGCcagcGCUCg -3'
miRNA:   3'- -GCgCGGGcGCUUGUUgUGCGc---CGAGa -5'
5406 3' -58.9 NC_001798.1 + 22100 0.69 0.653006
Target:  5'- aGcCGCCCGCGGACca-ACGgGGCg-- -3'
miRNA:   3'- gC-GCGGGCGCUUGuugUGCgCCGaga -5'
5406 3' -58.9 NC_001798.1 + 23561 0.67 0.722032
Target:  5'- gGUGCCCGCGAgggccccggggGCGGCGCccCGGC-Cg -3'
miRNA:   3'- gCGCGGGCGCU-----------UGUUGUGc-GCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 23885 0.68 0.672928
Target:  5'- gGCGCCCgagGCGGAgGAgGCGCGGg--- -3'
miRNA:   3'- gCGCGGG---CGCUUgUUgUGCGCCgaga -5'
5406 3' -58.9 NC_001798.1 + 23936 0.68 0.662979
Target:  5'- gGCGCCCGUgugggcgccGAGCuggGCgACGCGGCg-- -3'
miRNA:   3'- gCGCGGGCG---------CUUGu--UG-UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 24049 0.73 0.414363
Target:  5'- gGCGCCCGgGGACGugGCGCuggaccaGGC-CUg -3'
miRNA:   3'- gCGCGGGCgCUUGUugUGCG-------CCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 24282 0.7 0.583168
Target:  5'- aCGCGCCCcugcugGCGcGCGAgaACGCGGCgCUg -3'
miRNA:   3'- -GCGCGGG------CGCuUGUUg-UGCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 24445 0.66 0.778428
Target:  5'- gGUGCCCGcCGGcuACGGCGCcGCGgggguGCUCg -3'
miRNA:   3'- gCGCGGGC-GCU--UGUUGUG-CGC-----CGAGa -5'
5406 3' -58.9 NC_001798.1 + 24551 0.71 0.486661
Target:  5'- gGCGCCgGCGGugGugGCGgCGGC-Cg -3'
miRNA:   3'- gCGCGGgCGCUugUugUGC-GCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 24710 0.69 0.603055
Target:  5'- cCGCGCCCGgGGcccGCGG-GCGCGGC-Cg -3'
miRNA:   3'- -GCGCGGGCgCU---UGUUgUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 24766 0.66 0.793669
Target:  5'- gCGCGCCuggcugCGCGAgcugcgguucgugcGCGACGCGCuGGUgCUg -3'
miRNA:   3'- -GCGCGG------GCGCU--------------UGUUGUGCG-CCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 24816 0.7 0.553606
Target:  5'- uGCGCCUGCGcgggGACcuGCGCGUGGC-Cg -3'
miRNA:   3'- gCGCGGGCGC----UUGu-UGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 25333 0.67 0.741217
Target:  5'- uGCGcCCCGCGGGcCGugGC-CGaGCUCa -3'
miRNA:   3'- gCGC-GGGCGCUU-GUugUGcGC-CGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.