miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 178 0.74 0.366049
Target:  5'- cCGCGgggcugccuuCCCGCGGGCGccccCGCGCGGCUUUu -3'
miRNA:   3'- -GCGC----------GGGCGCUUGUu---GUGCGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 222 0.7 0.553606
Target:  5'- cCGCGCCCGCccc---CGCGCGGCa-- -3'
miRNA:   3'- -GCGCGGGCGcuuguuGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 1219 0.7 0.593098
Target:  5'- gCGCgGCCCGCGGcCGACGCccaGCGuaUCUg -3'
miRNA:   3'- -GCG-CGGGCGCUuGUUGUG---CGCcgAGA- -5'
5406 3' -58.9 NC_001798.1 + 1262 0.67 0.750678
Target:  5'- cCGCGUCCGCGucgucgcGCAGCACcaGCGGg--- -3'
miRNA:   3'- -GCGCGGGCGCu------UGUUGUG--CGCCgaga -5'
5406 3' -58.9 NC_001798.1 + 1318 0.73 0.423796
Target:  5'- aGCGCCCGCGcGCAgaacucccGC-CGCGGCcCg -3'
miRNA:   3'- gCGCGGGCGCuUGU--------UGuGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 1495 0.67 0.741217
Target:  5'- gCGuCGCCCGCGccCGAgGCGgCGGCcCg -3'
miRNA:   3'- -GC-GCGGGCGCuuGUUgUGC-GCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 1531 0.68 0.672928
Target:  5'- aGCGCCgG-GAGCAcgGCGCGGCg-- -3'
miRNA:   3'- gCGCGGgCgCUUGUugUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 2256 0.71 0.495068
Target:  5'- gGCGCgCCGcCGGggggcggggcggcGCAGCGCGCGGC-Ca -3'
miRNA:   3'- gCGCG-GGC-GCU-------------UGUUGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 2418 0.72 0.465494
Target:  5'- gGCGCCgGCGuguggcugggccccGGCGGCugGCGGCg-- -3'
miRNA:   3'- gCGCGGgCGC--------------UUGUUGugCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 2484 0.67 0.750678
Target:  5'- gCGgGCCgGCGGgucagcgccGCGGgGCGCGGCg-- -3'
miRNA:   3'- -GCgCGGgCGCU---------UGUUgUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 2567 0.76 0.293417
Target:  5'- gGCGgCCGCGGggcgggggGCGucCGCGCGGCUCUu -3'
miRNA:   3'- gCGCgGGCGCU--------UGUu-GUGCGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 2631 0.68 0.692722
Target:  5'- gGCGCCC-UGGcCGGgGCGgGGCUCUu -3'
miRNA:   3'- gCGCGGGcGCUuGUUgUGCgCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 2990 0.68 0.692722
Target:  5'- gGCcgGCCCGCGGGCcccgggcgcgGGgGCGCGGCg-- -3'
miRNA:   3'- gCG--CGGGCGCUUG----------UUgUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 3231 0.67 0.740266
Target:  5'- gGCGCCCcagggcgGCGAGCAcCccCGCGGCg-- -3'
miRNA:   3'- gCGCGGG-------CGCUUGUuGu-GCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 3263 0.68 0.662979
Target:  5'- cCGUaGCCgGCGGGCAcCGCGC-GCUCg -3'
miRNA:   3'- -GCG-CGGgCGCUUGUuGUGCGcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 3656 0.68 0.682845
Target:  5'- aGCGCCaCGUccccGGGCGccACGCGCgGGUUCUg -3'
miRNA:   3'- gCGCGG-GCG----CUUGU--UGUGCG-CCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 4215 0.66 0.822071
Target:  5'- gGCGCUgGCGGGgGcGCGgGCGGCgUCg -3'
miRNA:   3'- gCGCGGgCGCUUgU-UGUgCGCCG-AGa -5'
5406 3' -58.9 NC_001798.1 + 4358 0.75 0.335573
Target:  5'- aGCGCCgGCGGGgGGCGCGcCGGCg-- -3'
miRNA:   3'- gCGCGGgCGCUUgUUGUGC-GCCGaga -5'
5406 3' -58.9 NC_001798.1 + 5377 0.71 0.514933
Target:  5'- gCGCGUCCGCGucCGugGCGgCGGCcCg -3'
miRNA:   3'- -GCGCGGGCGCuuGUugUGC-GCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 7583 0.72 0.477401
Target:  5'- aCGCGCCCGCGucCGACACcCGGg--- -3'
miRNA:   3'- -GCGCGGGCGCuuGUUGUGcGCCgaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.