miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 71562 0.81 0.142453
Target:  5'- gGCGCCaGCGAGCAcacGCACggGCGGCUCUg -3'
miRNA:   3'- gCGCGGgCGCUUGU---UGUG--CGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 153030 0.8 0.146076
Target:  5'- cCGgGCCCGCGcGGCGGCGCGCGGUUg- -3'
miRNA:   3'- -GCgCGGGCGC-UUGUUGUGCGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 27057 0.78 0.211321
Target:  5'- cCGCGCCCGCGGGgGGuCugG-GGCUCUg -3'
miRNA:   3'- -GCGCGGGCGCUUgUU-GugCgCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 27521 0.77 0.227067
Target:  5'- gGCGCCCGCGGgaagGCAGCccCGCGGCg-- -3'
miRNA:   3'- gCGCGGGCGCU----UGUUGu-GCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 102210 0.77 0.255508
Target:  5'- gGCGCgCCGgGAGuCGACcggGCGCGGCUCg -3'
miRNA:   3'- gCGCG-GGCgCUU-GUUG---UGCGCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 97719 0.76 0.261536
Target:  5'- uGCGUgCGCGAGCAGCGCGgGgaGCUCg -3'
miRNA:   3'- gCGCGgGCGCUUGUUGUGCgC--CGAGa -5'
5406 3' -58.9 NC_001798.1 + 51839 0.76 0.267679
Target:  5'- aCGCGCCUGCacACGGagggGCGCGGCUCg -3'
miRNA:   3'- -GCGCGGGCGcuUGUUg---UGCGCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 37196 0.76 0.280313
Target:  5'- gGCGCCgCGcCGAACGACggGCGCGGCg-- -3'
miRNA:   3'- gCGCGG-GC-GCUUGUUG--UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 149988 0.76 0.286806
Target:  5'- gGCGCCCGCGGACGccgggGCGaGCGGCcCg -3'
miRNA:   3'- gCGCGGGCGCUUGU-----UGUgCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 2567 0.76 0.293417
Target:  5'- gGCGgCCGCGGggcgggggGCGucCGCGCGGCUCUu -3'
miRNA:   3'- gCGCgGGCGCU--------UGUu-GUGCGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 87177 0.76 0.293417
Target:  5'- gCGUGCagCGCGGGCGACGgGCGGCUg- -3'
miRNA:   3'- -GCGCGg-GCGCUUGUUGUgCGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 36233 0.75 0.32825
Target:  5'- cCGCGCCCGCGuuucuGCcGCcCGCGcGCUCc -3'
miRNA:   3'- -GCGCGGGCGCu----UGuUGuGCGC-CGAGa -5'
5406 3' -58.9 NC_001798.1 + 4358 0.75 0.335573
Target:  5'- aGCGCCgGCGGGgGGCGCGcCGGCg-- -3'
miRNA:   3'- gCGCGGgCGCUUgUUGUGC-GCCGaga -5'
5406 3' -58.9 NC_001798.1 + 77484 0.74 0.343016
Target:  5'- cCGCgGCCCGCGcGACGAC-CGCuGCUCg -3'
miRNA:   3'- -GCG-CGGGCGC-UUGUUGuGCGcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 154516 0.74 0.366049
Target:  5'- cCGCGgggcugccuuCCCGCGGGCGccccCGCGCGGCUUUu -3'
miRNA:   3'- -GCGC----------GGGCGCUUGUu---GUGCGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 178 0.74 0.366049
Target:  5'- cCGCGgggcugccuuCCCGCGGGCGccccCGCGCGGCUUUu -3'
miRNA:   3'- -GCGC----------GGGCGCUUGUu---GUGCGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 52498 0.74 0.366049
Target:  5'- gCGCGCCgGCGcaggGACGACGCGgCGGC-Cg -3'
miRNA:   3'- -GCGCGGgCGC----UUGUUGUGC-GCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 117991 0.74 0.37396
Target:  5'- aGCGCCCGcCGGGguGC-CGCGaGCUCg -3'
miRNA:   3'- gCGCGGGC-GCUUguUGuGCGC-CGAGa -5'
5406 3' -58.9 NC_001798.1 + 17119 0.74 0.37396
Target:  5'- gGcCGCCCGCGAGCggUaguGCGCGGUg-- -3'
miRNA:   3'- gC-GCGGGCGCUUGuuG---UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 76535 0.74 0.37396
Target:  5'- gGCGCUCGCGcagcagcugGACAGCgACGCGGC-CUu -3'
miRNA:   3'- gCGCGGGCGC---------UUGUUG-UGCGCCGaGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.