miRNA display CGI


Results 21 - 40 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 76535 0.74 0.37396
Target:  5'- gGCGCUCGCGcagcagcugGACAGCgACGCGGC-CUu -3'
miRNA:   3'- gCGCGGGCGC---------UUGUUG-UGCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 69526 0.73 0.398379
Target:  5'- gCGUgGCCCGCGAGCu-CGCGCgGGCUg- -3'
miRNA:   3'- -GCG-CGGGCGCUUGuuGUGCG-CCGAga -5'
5406 3' -58.9 NC_001798.1 + 31218 0.73 0.398379
Target:  5'- gGCGcCCCGCgGAGCAGCAgcaGCGGCg-- -3'
miRNA:   3'- gCGC-GGGCG-CUUGUUGUg--CGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 107450 0.73 0.406743
Target:  5'- cCGCGCCC-CGAccccgaggACGGCGCGgGGuCUCUg -3'
miRNA:   3'- -GCGCGGGcGCU--------UGUUGUGCgCC-GAGA- -5'
5406 3' -58.9 NC_001798.1 + 97558 0.73 0.406743
Target:  5'- gGaCGCCCGCGAGCGAggacggggaGCGCGGCc-- -3'
miRNA:   3'- gC-GCGGGCGCUUGUUg--------UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 71130 0.73 0.406743
Target:  5'- gCGCGCgUGCGGACGG-ACGCGGCcgUCUu -3'
miRNA:   3'- -GCGCGgGCGCUUGUUgUGCGCCG--AGA- -5'
5406 3' -58.9 NC_001798.1 + 24049 0.73 0.414363
Target:  5'- gGCGCCCGgGGACGugGCGCuggaccaGGC-CUg -3'
miRNA:   3'- gCGCGGGCgCUUGUugUGCG-------CCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 1318 0.73 0.423796
Target:  5'- aGCGCCCGCGcGCAgaacucccGC-CGCGGCcCg -3'
miRNA:   3'- gCGCGGGCGCuUGU--------UGuGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 146456 0.73 0.423796
Target:  5'- cCGCGgCCGCagccGAGCAGCGcCGCgGGCUCc -3'
miRNA:   3'- -GCGCgGGCG----CUUGUUGU-GCG-CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 153671 0.73 0.429865
Target:  5'- gCGCGUCCGCGGGCGgggacGCgggggccgccgccgGCGCaGGCUCa -3'
miRNA:   3'- -GCGCGGGCGCUUGU-----UG--------------UGCG-CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 83356 0.72 0.441271
Target:  5'- gCGuCGCCCGCGAACAuagGCuGCGgGGCg-- -3'
miRNA:   3'- -GC-GCGGGCGCUUGU---UG-UGCgCCGaga -5'
5406 3' -58.9 NC_001798.1 + 27565 0.72 0.441271
Target:  5'- gGCGCCCGCGGGgGA-GCGgcCGGCUCc -3'
miRNA:   3'- gCGCGGGCGCUUgUUgUGC--GCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 118680 0.72 0.45016
Target:  5'- gGCGCUCGCGGACGugGCGCacgaaucGUUCg -3'
miRNA:   3'- gCGCGGGCGCUUGUugUGCGc------CGAGa -5'
5406 3' -58.9 NC_001798.1 + 2418 0.72 0.465494
Target:  5'- gGCGCCgGCGuguggcugggccccGGCGGCugGCGGCg-- -3'
miRNA:   3'- gCGCGGgCGC--------------UUGUUGugCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 153095 0.72 0.467316
Target:  5'- gGCGCCgggcccuCGCGGAUAuauACGCGgGGCUCc -3'
miRNA:   3'- gCGCGG-------GCGCUUGU---UGUGCgCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 32059 0.72 0.47648
Target:  5'- gGCGUCCGCGGGCGcCGCGCccccgucGGCgUCUc -3'
miRNA:   3'- gCGCGGGCGCUUGUuGUGCG-------CCG-AGA- -5'
5406 3' -58.9 NC_001798.1 + 7583 0.72 0.477401
Target:  5'- aCGCGCCCGCGucCGACACcCGGg--- -3'
miRNA:   3'- -GCGCGGGCGCuuGUUGUGcGCCgaga -5'
5406 3' -58.9 NC_001798.1 + 54645 0.72 0.477401
Target:  5'- cCGCGCCCccCGAGCAGCGgccggcagcCGCGGCg-- -3'
miRNA:   3'- -GCGCGGGc-GCUUGUUGU---------GCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 78818 0.71 0.486661
Target:  5'- gCGcCGCCCGCGGcgACGGCcccggccccugGCGCGGCa-- -3'
miRNA:   3'- -GC-GCGGGCGCU--UGUUG-----------UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 24551 0.71 0.486661
Target:  5'- gGCGCCgGCGGugGugGCGgCGGC-Cg -3'
miRNA:   3'- gCGCGGgCGCUugUugUGC-GCCGaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.