miRNA display CGI


Results 21 - 40 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 27840 0.66 0.813641
Target:  5'- gCGUGCCgaGUGAACucucccgccccGACGCGCuccGGCUCc -3'
miRNA:   3'- -GCGCGGg-CGCUUG-----------UUGUGCG---CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 142159 0.66 0.813641
Target:  5'- aCGUGUuuGagucagGGAC-GCGCGCGGUUCUg -3'
miRNA:   3'- -GCGCGggCg-----CUUGuUGUGCGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 136810 0.66 0.813641
Target:  5'- aCGCGCUCGaaGGGaGACGCGUGGCg-- -3'
miRNA:   3'- -GCGCGGGCg-CUUgUUGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 134064 0.66 0.813641
Target:  5'- uCGCGaCgCCGCGGGgGaggcGCGCGCGcGCUUc -3'
miRNA:   3'- -GCGC-G-GGCGCUUgU----UGUGCGC-CGAGa -5'
5406 3' -58.9 NC_001798.1 + 69009 0.66 0.813641
Target:  5'- gGCGUCgCGCGcaucguaggcGGCGgcGCACGCGGC-Ca -3'
miRNA:   3'- gCGCGG-GCGC----------UUGU--UGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 43101 0.66 0.813641
Target:  5'- cCGCGUCCGCGAccACGGuCGCuucCGGCg-- -3'
miRNA:   3'- -GCGCGGGCGCU--UGUU-GUGc--GCCGaga -5'
5406 3' -58.9 NC_001798.1 + 29650 0.66 0.813641
Target:  5'- cCG-GCaCUGCGAGCGACGgaGCGGCg-- -3'
miRNA:   3'- -GCgCG-GGCGCUUGUUGUg-CGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 131960 0.66 0.812789
Target:  5'- aCGUGCCCGCGGaucaucgccauggACGccaccgccaACGCGCaGCUg- -3'
miRNA:   3'- -GCGCGGGCGCU-------------UGU---------UGUGCGcCGAga -5'
5406 3' -58.9 NC_001798.1 + 26496 0.66 0.811081
Target:  5'- gCGgGCCgCGCGGggacggugcuggccGCGGCGgGCGGCg-- -3'
miRNA:   3'- -GCgCGG-GCGCU--------------UGUUGUgCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 50667 0.66 0.805054
Target:  5'- gGgGUCCGCGuauaaaGGCAgGCGCGCGGgUCc -3'
miRNA:   3'- gCgCGGGCGC------UUGU-UGUGCGCCgAGa -5'
5406 3' -58.9 NC_001798.1 + 97276 0.66 0.805054
Target:  5'- gCGCGUUCGgGGGCcacCugGCGGCgCUg -3'
miRNA:   3'- -GCGCGGGCgCUUGuu-GugCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 9653 0.66 0.805054
Target:  5'- gGCGCa-GCGGGCcGCGCGCGGagggCg -3'
miRNA:   3'- gCGCGggCGCUUGuUGUGCGCCga--Ga -5'
5406 3' -58.9 NC_001798.1 + 48166 0.66 0.805054
Target:  5'- gGCGCCUgGCGGccacGCAcgcccgGCugGCGGCg-- -3'
miRNA:   3'- gCGCGGG-CGCU----UGU------UGugCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 90708 0.66 0.805054
Target:  5'- gGCGCUCGCaGAGau-CGCGCGGggCa -3'
miRNA:   3'- gCGCGGGCG-CUUguuGUGCGCCgaGa -5'
5406 3' -58.9 NC_001798.1 + 100181 0.66 0.805054
Target:  5'- cCGUcgGCCgGCGggUgAGCGCGCGcauGCUCg -3'
miRNA:   3'- -GCG--CGGgCGCuuG-UUGUGCGC---CGAGa -5'
5406 3' -58.9 NC_001798.1 + 146509 0.66 0.805054
Target:  5'- aCGC-CCCGCGc-CGGC-CGCGGCg-- -3'
miRNA:   3'- -GCGcGGGCGCuuGUUGuGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 46842 0.66 0.805054
Target:  5'- cCGCcCCCGCGAAUAGCuACgGCcGCUUg -3'
miRNA:   3'- -GCGcGGGCGCUUGUUG-UG-CGcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 74750 0.66 0.805054
Target:  5'- -cCGCCCGCGaAGCccucggccccgGACGcCGCGGcCUCg -3'
miRNA:   3'- gcGCGGGCGC-UUG-----------UUGU-GCGCC-GAGa -5'
5406 3' -58.9 NC_001798.1 + 109456 0.66 0.796318
Target:  5'- gCGCGCCU-CGGGCAuCugGUGGC-Cg -3'
miRNA:   3'- -GCGCGGGcGCUUGUuGugCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 91570 0.66 0.796318
Target:  5'- gGUGUCCGCGGG-GGCGcCGCGGUUUc -3'
miRNA:   3'- gCGCGGGCGCUUgUUGU-GCGCCGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.