Results 41 - 60 of 240 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5406 | 3' | -58.9 | NC_001798.1 | + | 53242 | 0.66 | 0.796318 |
Target: 5'- gCGCGgCCGUGGGCGuCcUGCGGCa-- -3' miRNA: 3'- -GCGCgGGCGCUUGUuGuGCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 56542 | 0.66 | 0.796318 |
Target: 5'- gGCGCCCGCacGAugucuGgGACGCGaCGGC-Ca -3' miRNA: 3'- gCGCGGGCG--CU-----UgUUGUGC-GCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 91570 | 0.66 | 0.796318 |
Target: 5'- gGUGUCCGCGGG-GGCGcCGCGGUUUc -3' miRNA: 3'- gCGCGGGCGCUUgUUGU-GCGCCGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 109456 | 0.66 | 0.796318 |
Target: 5'- gCGCGCCU-CGGGCAuCugGUGGC-Cg -3' miRNA: 3'- -GCGCGGGcGCUUGUuGugCGCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 137631 | 0.66 | 0.796318 |
Target: 5'- gCGCGCCCGCucGGGgGGCGCGaaGCa-- -3' miRNA: 3'- -GCGCGGGCG--CUUgUUGUGCgcCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 70228 | 0.66 | 0.795436 |
Target: 5'- aGCgaGCCgGCGGGCAGCGCGgacgagcCGGCguuUCUg -3' miRNA: 3'- gCG--CGGgCGCUUGUUGUGC-------GCCG---AGA- -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 24766 | 0.66 | 0.793669 |
Target: 5'- gCGCGCCuggcugCGCGAgcugcgguucgugcGCGACGCGCuGGUgCUg -3' miRNA: 3'- -GCGCGG------GCGCU--------------UGUUGUGCG-CCGaGA- -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 95003 | 0.66 | 0.78744 |
Target: 5'- gGC-CCCGCaGGGCGGCGCG-GGC-CUg -3' miRNA: 3'- gCGcGGGCG-CUUGUUGUGCgCCGaGA- -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 104113 | 0.66 | 0.78744 |
Target: 5'- gGCGCCCGaCGAcauaucCAcCACGCGcCUCg -3' miRNA: 3'- gCGCGGGC-GCUu-----GUuGUGCGCcGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 109084 | 0.66 | 0.78744 |
Target: 5'- cCGaCGCCCGCcGACAACGgCuCGGCgCUg -3' miRNA: 3'- -GC-GCGGGCGcUUGUUGU-GcGCCGaGA- -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 141563 | 0.66 | 0.78744 |
Target: 5'- uCGCGUUCGCGGAgGAgcUGCGGCg-- -3' miRNA: 3'- -GCGCGGGCGCUUgUUguGCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 73324 | 0.66 | 0.78744 |
Target: 5'- aCGCagGCCCGCGcgccguCGACGCGCccGGCg-- -3' miRNA: 3'- -GCG--CGGGCGCuu----GUUGUGCG--CCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 35328 | 0.66 | 0.786545 |
Target: 5'- gGCGCCCGCaaccgcaGAGCAcucaGCugGCGcGCc-- -3' miRNA: 3'- gCGCGGGCG-------CUUGU----UGugCGC-CGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 24445 | 0.66 | 0.778428 |
Target: 5'- gGUGCCCGcCGGcuACGGCGCcGCGgggguGCUCg -3' miRNA: 3'- gCGCGGGC-GCU--UGUUGUG-CGC-----CGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 117559 | 0.66 | 0.778428 |
Target: 5'- uGCGCCCagGUGccGCGGCGCGcCGGCa-- -3' miRNA: 3'- gCGCGGG--CGCu-UGUUGUGC-GCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 102533 | 0.66 | 0.778428 |
Target: 5'- cCGUcCCCGCGGccgGCAggccGCACGCGGUc-- -3' miRNA: 3'- -GCGcGGGCGCU---UGU----UGUGCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 105776 | 0.66 | 0.77752 |
Target: 5'- gCGCGCCCGCGggUccgcuuaAGCAgGUGaggauGCUUg -3' miRNA: 3'- -GCGCGGGCGCuuG-------UUGUgCGC-----CGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 98621 | 0.66 | 0.77752 |
Target: 5'- cCGCGCCUcggGCGGcguggccGCGACcguCGCGGCg-- -3' miRNA: 3'- -GCGCGGG---CGCU-------UGUUGu--GCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 86102 | 0.67 | 0.769292 |
Target: 5'- gCGCGCcgCCGCGGACGcccgccGCGCcGCGGUc-- -3' miRNA: 3'- -GCGCG--GGCGCUUGU------UGUG-CGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 52528 | 0.67 | 0.769292 |
Target: 5'- gCGCGCgCCGUGcuGGCG--ACGgGGCUCa -3' miRNA: 3'- -GCGCG-GGCGC--UUGUugUGCgCCGAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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