miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 154560 0.7 0.553606
Target:  5'- cCGCGCCCGCccc---CGCGCGGCa-- -3'
miRNA:   3'- -GCGCGGGCGcuuguuGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 154516 0.74 0.366049
Target:  5'- cCGCGgggcugccuuCCCGCGGGCGccccCGCGCGGCUUUu -3'
miRNA:   3'- -GCGC----------GGGCGCUUGUu---GUGCGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 154045 0.67 0.769292
Target:  5'- gCGCGCCggggCGCGGcACGGCuggagcgccgggGCGCGGCa-- -3'
miRNA:   3'- -GCGCGG----GCGCU-UGUUG------------UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 153801 0.67 0.760039
Target:  5'- gGCGgCgGCGGGgGGCAgGCGGCg-- -3'
miRNA:   3'- gCGCgGgCGCUUgUUGUgCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 153671 0.73 0.429865
Target:  5'- gCGCGUCCGCGGGCGgggacGCgggggccgccgccgGCGCaGGCUCa -3'
miRNA:   3'- -GCGCGGGCGCUUGU-----UG--------------UGCG-CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 153419 0.69 0.63302
Target:  5'- gCGCGCCCaggacccccGuCGGGCcaGGCGCGCGGCcgUCUc -3'
miRNA:   3'- -GCGCGGG---------C-GCUUG--UUGUGCGCCG--AGA- -5'
5406 3' -58.9 NC_001798.1 + 153095 0.72 0.467316
Target:  5'- gGCGCCgggcccuCGCGGAUAuauACGCGgGGCUCc -3'
miRNA:   3'- gCGCGG-------GCGCUUGU---UGUGCgCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 153030 0.8 0.146076
Target:  5'- cCGgGCCCGCGcGGCGGCGCGCGGUUg- -3'
miRNA:   3'- -GCgCGGGCGC-UUGUUGUGCGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 150570 0.69 0.643017
Target:  5'- gGgGCCCGCgGGGCGGCGCGgagaCGGCg-- -3'
miRNA:   3'- gCgCGGGCG-CUUGUUGUGC----GCCGaga -5'
5406 3' -58.9 NC_001798.1 + 150451 0.69 0.623023
Target:  5'- aCGCGCggggcgacggCCGCGcGGgGGCGCGCGGCg-- -3'
miRNA:   3'- -GCGCG----------GGCGC-UUgUUGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 150401 0.67 0.741217
Target:  5'- cCGCGCUCGCaGACAcCACggggGCGGCg-- -3'
miRNA:   3'- -GCGCGGGCGcUUGUuGUG----CGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 150359 0.67 0.760039
Target:  5'- gCGCGUCCaccggcacgGCGGGCGGCGCG-GGCcCg -3'
miRNA:   3'- -GCGCGGG---------CGCUUGUUGUGCgCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 149988 0.76 0.286806
Target:  5'- gGCGCCCGCGGACGccgggGCGaGCGGCcCg -3'
miRNA:   3'- gCGCGGGCGCUUGU-----UGUgCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 149731 0.66 0.822071
Target:  5'- gGCcCCCGCGGcGCAGCAgCGCGGg--- -3'
miRNA:   3'- gCGcGGGCGCU-UGUUGU-GCGCCgaga -5'
5406 3' -58.9 NC_001798.1 + 147543 0.69 0.623023
Target:  5'- gCGCGCCCcuCGAACGcCGCGCGuuCUCg -3'
miRNA:   3'- -GCGCGGGc-GCUUGUuGUGCGCc-GAGa -5'
5406 3' -58.9 NC_001798.1 + 147102 0.66 0.814491
Target:  5'- gCGCGUUCGCGAAaGGCGCGaaaggggcccccggaGGCUUUu -3'
miRNA:   3'- -GCGCGGGCGCUUgUUGUGCg--------------CCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 146509 0.66 0.805054
Target:  5'- aCGC-CCCGCGc-CGGC-CGCGGCg-- -3'
miRNA:   3'- -GCGcGGGCGCuuGUUGuGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 146456 0.73 0.423796
Target:  5'- cCGCGgCCGCagccGAGCAGCGcCGCgGGCUCc -3'
miRNA:   3'- -GCGCgGGCG----CUUGUUGU-GCG-CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 145976 0.66 0.822071
Target:  5'- cCGCGCCCGCagccuccGGCAGCACGCc----- -3'
miRNA:   3'- -GCGCGGGCGc------UUGUUGUGCGccgaga -5'
5406 3' -58.9 NC_001798.1 + 143790 0.69 0.617027
Target:  5'- gGCGCCCcagaGCauaaagaccaggcccGGGCGGCGCGCGGC-Ca -3'
miRNA:   3'- gCGCGGG----CG---------------CUUGUUGUGCGCCGaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.