miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 5' -55 NC_001798.1 + 31018 0.66 0.928647
Target:  5'- cGGGggUCgggCGGGGGUCGgGCGGGgGu- -3'
miRNA:   3'- -CCUuuGG---GUUCCCAGUgCGCCCgUug -5'
5406 5' -55 NC_001798.1 + 4079 0.66 0.92812
Target:  5'- cGGucGCCgCGGGGGUCcgggccgGgGCGGGCu-- -3'
miRNA:   3'- -CCuuUGG-GUUCCCAG-------UgCGCCCGuug -5'
5406 5' -55 NC_001798.1 + 93795 0.66 0.925446
Target:  5'- gGGggGCCauuGGGGUCucggaacgaugaacaGCGCGuaCAGCg -3'
miRNA:   3'- -CCuuUGGgu-UCCCAG---------------UGCGCccGUUG- -5'
5406 5' -55 NC_001798.1 + 50712 0.66 0.923264
Target:  5'- ---uGCCCGcGGGUCuGCGUGGG-GACg -3'
miRNA:   3'- ccuuUGGGUuCCCAG-UGCGCCCgUUG- -5'
5406 5' -55 NC_001798.1 + 35031 0.66 0.923264
Target:  5'- cGGcccGCCCGGGGGUC-CcCGaGGCAAg -3'
miRNA:   3'- -CCuu-UGGGUUCCCAGuGcGC-CCGUUg -5'
5406 5' -55 NC_001798.1 + 102372 0.66 0.922713
Target:  5'- cGGAAGCCCAcccgccuGGcGGUCG-GC-GGCGAUg -3'
miRNA:   3'- -CCUUUGGGU-------UC-CCAGUgCGcCCGUUG- -5'
5406 5' -55 NC_001798.1 + 73923 0.67 0.917641
Target:  5'- cGGAGGCCauCGAGGGaugUCugGUggagggGGGCGAg -3'
miRNA:   3'- -CCUUUGG--GUUCCC---AGugCG------CCCGUUg -5'
5406 5' -55 NC_001798.1 + 12697 0.67 0.917641
Target:  5'- -cAGGCCC--GGGUUGCuGgGGGCGGCg -3'
miRNA:   3'- ccUUUGGGuuCCCAGUG-CgCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 6399 0.67 0.917641
Target:  5'- cGGggGgCCGGGGGg-ACG-GGGgGACg -3'
miRNA:   3'- -CCuuUgGGUUCCCagUGCgCCCgUUG- -5'
5406 5' -55 NC_001798.1 + 4352 0.67 0.917641
Target:  5'- cGGccGAGCgCCGgcGGGGggCGCGCcGGCGGCg -3'
miRNA:   3'- -CC--UUUG-GGU--UCCCa-GUGCGcCCGUUG- -5'
5406 5' -55 NC_001798.1 + 69983 0.67 0.911777
Target:  5'- gGGGuuUCgAAGGGUCcC-CGGGCGAUa -3'
miRNA:   3'- -CCUuuGGgUUCCCAGuGcGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 101739 0.67 0.911777
Target:  5'- cGGcgGCCC--GGGccguguccacguUCACGUGGGCcGCg -3'
miRNA:   3'- -CCuuUGGGuuCCC------------AGUGCGCCCGuUG- -5'
5406 5' -55 NC_001798.1 + 149967 0.67 0.911777
Target:  5'- cGGAGACgCCGAcGGGg-GCGCGGcGCccGCg -3'
miRNA:   3'- -CCUUUG-GGUU-CCCagUGCGCC-CGu-UG- -5'
5406 5' -55 NC_001798.1 + 104546 0.67 0.911777
Target:  5'- cGGuGGGCCaCGucgucGGGGuUCACGCGGGUg-- -3'
miRNA:   3'- -CC-UUUGG-GU-----UCCC-AGUGCGCCCGuug -5'
5406 5' -55 NC_001798.1 + 83604 0.67 0.905674
Target:  5'- cGGGACCUu-GGGUCGCGCcguaagaaucGGGCcggaGGCg -3'
miRNA:   3'- cCUUUGGGuuCCCAGUGCG----------CCCG----UUG- -5'
5406 5' -55 NC_001798.1 + 2222 0.67 0.905674
Target:  5'- -cGGGCCCGAGGcG-CGCaGCGGGCcgaaGGCg -3'
miRNA:   3'- ccUUUGGGUUCC-CaGUG-CGCCCG----UUG- -5'
5406 5' -55 NC_001798.1 + 79309 0.67 0.905674
Target:  5'- aGGAGuUCC-GGGG-CGCGCGGG-AACu -3'
miRNA:   3'- -CCUUuGGGuUCCCaGUGCGCCCgUUG- -5'
5406 5' -55 NC_001798.1 + 105510 0.67 0.89998
Target:  5'- gGGGAACUCGGGGGUgAUGaagcuccuggagucGGCGACg -3'
miRNA:   3'- -CCUUUGGGUUCCCAgUGCgc------------CCGUUG- -5'
5406 5' -55 NC_001798.1 + 78123 0.67 0.899336
Target:  5'- cGAGGCCguGGGGcgcCugGCGGaCGACa -3'
miRNA:   3'- cCUUUGGguUCCCa--GugCGCCcGUUG- -5'
5406 5' -55 NC_001798.1 + 52331 0.67 0.898689
Target:  5'- uGGGcAGCCCcGGGGUCguggcggccgagcACGaggcgcuGGGCGACa -3'
miRNA:   3'- -CCU-UUGGGuUCCCAG-------------UGCg------CCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.