miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 5' -55 NC_001798.1 + 147146 0.66 0.93869
Target:  5'- cGAuuCCCGgccgGGGGUC-C-CGGGUAGCc -3'
miRNA:   3'- cCUuuGGGU----UCCCAGuGcGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 154395 0.66 0.93869
Target:  5'- gGGggGCgCGAaggcGGGcggcggcggCGgGCGGGCGGCa -3'
miRNA:   3'- -CCuuUGgGUU----CCCa--------GUgCGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 150464 0.66 0.93869
Target:  5'- cGGccGCgCGGGGG-CGCGCGGcGCGc- -3'
miRNA:   3'- -CCuuUGgGUUCCCaGUGCGCC-CGUug -5'
5406 5' -55 NC_001798.1 + 150200 0.66 0.93869
Target:  5'- gGGggGCggcaCCGGGGGUguuggugcCGCGGGgGACc -3'
miRNA:   3'- -CCuuUG----GGUUCCCAgu------GCGCCCgUUG- -5'
5406 5' -55 NC_001798.1 + 74028 0.66 0.93869
Target:  5'- uGGAGuACCCGGcGG-CGCGC-GGCGGCc -3'
miRNA:   3'- -CCUU-UGGGUUcCCaGUGCGcCCGUUG- -5'
5406 5' -55 NC_001798.1 + 4132 0.66 0.93869
Target:  5'- cGGGGcgccGCCCccGGGGcCcuCGCGGGCAc- -3'
miRNA:   3'- -CCUU----UGGGu-UCCCaGu-GCGCCCGUug -5'
5406 5' -55 NC_001798.1 + 34725 0.66 0.933789
Target:  5'- gGGAAGgggCGAGGGUCGgGCccgggagcgGGGCGGCc -3'
miRNA:   3'- -CCUUUgg-GUUCCCAGUgCG---------CCCGUUG- -5'
5406 5' -55 NC_001798.1 + 46570 0.66 0.933789
Target:  5'- --cGACCCgGAGGGcCcCGgGGGCAAa -3'
miRNA:   3'- ccuUUGGG-UUCCCaGuGCgCCCGUUg -5'
5406 5' -55 NC_001798.1 + 46674 0.66 0.933789
Target:  5'- uGggGCCCGGGGccggauacCGCGgGGGCGu- -3'
miRNA:   3'- cCuuUGGGUUCCca------GUGCgCCCGUug -5'
5406 5' -55 NC_001798.1 + 96022 0.66 0.933789
Target:  5'- cGGcacACCgGcGGGgcgggCGgGCGGGCGACg -3'
miRNA:   3'- -CCuu-UGGgUuCCCa----GUgCGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 31267 0.66 0.933789
Target:  5'- uGGGAUCU--GGGUCugG-GGGCGGCc -3'
miRNA:   3'- cCUUUGGGuuCCCAGugCgCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 72702 0.66 0.933789
Target:  5'- gGGAAAUCCAcGGGUucCugGCcaucgugucGGGCAu- -3'
miRNA:   3'- -CCUUUGGGUuCCCA--GugCG---------CCCGUug -5'
5406 5' -55 NC_001798.1 + 100746 0.66 0.933789
Target:  5'- gGGGGACUU-GGGG-CGCGCGGuCGGCa -3'
miRNA:   3'- -CCUUUGGGuUCCCaGUGCGCCcGUUG- -5'
5406 5' -55 NC_001798.1 + 69171 0.66 0.933789
Target:  5'- cGGAGCCCGAuggcGGGcCAgGUGGGgGAg -3'
miRNA:   3'- cCUUUGGGUU----CCCaGUgCGCCCgUUg -5'
5406 5' -55 NC_001798.1 + 83268 0.66 0.928647
Target:  5'- cGGGGugCUggGGGUCuuG-GGGUcGCg -3'
miRNA:   3'- -CCUUugGGuuCCCAGugCgCCCGuUG- -5'
5406 5' -55 NC_001798.1 + 85917 0.66 0.928647
Target:  5'- ---uGCaCCGAGGGcaagCGCGgGGGCGGa -3'
miRNA:   3'- ccuuUG-GGUUCCCa---GUGCgCCCGUUg -5'
5406 5' -55 NC_001798.1 + 55563 0.66 0.928647
Target:  5'- cGGAcaAACCCGccGGGGcuuCGUGGGUAGu -3'
miRNA:   3'- -CCU--UUGGGU--UCCCaguGCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 4214 0.66 0.928647
Target:  5'- cGgcGCUgGcGGGg-GCGCGGGCGGCg -3'
miRNA:   3'- cCuuUGGgUuCCCagUGCGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 30985 0.66 0.928647
Target:  5'- cGGGggUCgggCGGGGGUCGgGCGGGgGu- -3'
miRNA:   3'- -CCUuuGG---GUUCCCAGUgCGCCCgUug -5'
5406 5' -55 NC_001798.1 + 20908 0.66 0.928647
Target:  5'- -uGAACCCGGGGGUgGgGaugGGGgAGCa -3'
miRNA:   3'- ccUUUGGGUUCCCAgUgCg--CCCgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.