miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 5' -55 NC_001798.1 + 18255 0.73 0.61829
Target:  5'- cGGggGCCCGGGGGcCAgguacgcauccucCGCGGGgGu- -3'
miRNA:   3'- -CCuuUGGGUUCCCaGU-------------GCGCCCgUug -5'
5406 5' -55 NC_001798.1 + 16184 0.73 0.619317
Target:  5'- cGGGGACCgGGGGGaCGCaCGGGCcGCc -3'
miRNA:   3'- -CCUUUGGgUUCCCaGUGcGCCCGuUG- -5'
5406 5' -55 NC_001798.1 + 42806 0.73 0.619317
Target:  5'- gGGAuaGGCgUcGGGGUCuACGCGGGCcGCg -3'
miRNA:   3'- -CCU--UUGgGuUCCCAG-UGCGCCCGuUG- -5'
5406 5' -55 NC_001798.1 + 23559 0.73 0.629591
Target:  5'- gGGguGCCCGcgAGGGcCcCGgGGGCGGCg -3'
miRNA:   3'- -CCuuUGGGU--UCCCaGuGCgCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 121328 0.73 0.629591
Target:  5'- cGAAACCCAGacccGGGccCACGCGaccGGCGACu -3'
miRNA:   3'- cCUUUGGGUU----CCCa-GUGCGC---CCGUUG- -5'
5406 5' -55 NC_001798.1 + 39186 0.73 0.633701
Target:  5'- aGGAAACCCGAcGGGUCucgGCGUcaaacccccccgcuuGGGUGGCc -3'
miRNA:   3'- -CCUUUGGGUU-CCCAG---UGCG---------------CCCGUUG- -5'
5406 5' -55 NC_001798.1 + 46000 0.72 0.639867
Target:  5'- gGGGGAUCCAGGGGaggGCGUGGGUccccgcGACg -3'
miRNA:   3'- -CCUUUGGGUUCCCag-UGCGCCCG------UUG- -5'
5406 5' -55 NC_001798.1 + 78533 0.72 0.639867
Target:  5'- cGGAGGCCaccgagcGGGUCAUGgCGGGCcuGCg -3'
miRNA:   3'- -CCUUUGGguu----CCCAGUGC-GCCCGu-UG- -5'
5406 5' -55 NC_001798.1 + 46512 0.72 0.639867
Target:  5'- aGGGAGCUCGgcucggugAGGGUCGgGgGGGUGGCc -3'
miRNA:   3'- -CCUUUGGGU--------UCCCAGUgCgCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 47862 0.72 0.660392
Target:  5'- cGGggGCCCcguGGG-CGCcgGCGGGCGcucGCa -3'
miRNA:   3'- -CCuuUGGGuu-CCCaGUG--CGCCCGU---UG- -5'
5406 5' -55 NC_001798.1 + 150557 0.72 0.660392
Target:  5'- aGGAGagcgGCCCGGGGccCGCG-GGGCGGCg -3'
miRNA:   3'- -CCUU----UGGGUUCCcaGUGCgCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 74271 0.72 0.667557
Target:  5'- cGGGAACgcccgcguuuaucgCCAAGGuG-CGgGCGGGCGACg -3'
miRNA:   3'- -CCUUUG--------------GGUUCC-CaGUgCGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 26882 0.72 0.669602
Target:  5'- cGGGggUCgggcgggCGGGGGUCGgGCGGGCGGg -3'
miRNA:   3'- -CCUuuGG-------GUUCCCAGUgCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 26956 0.72 0.669602
Target:  5'- cGGGggUCgggcgggCGGGGGUCGgGCGGGCGGg -3'
miRNA:   3'- -CCUuuGG-------GUUCCCAGUgCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 26837 0.72 0.669602
Target:  5'- cGGGggUCgggcgggCGGGGGUCGgGCGGGCGGg -3'
miRNA:   3'- -CCUuuGG-------GUUCCCAGUgCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 134667 0.72 0.670624
Target:  5'- cGGAcACCCGcagcGGGUCacgGCGCGGGUg-- -3'
miRNA:   3'- -CCUuUGGGUu---CCCAG---UGCGCCCGuug -5'
5406 5' -55 NC_001798.1 + 15053 0.72 0.680825
Target:  5'- cGGAugGGCCC-GGGG-CGCGCGGGgGGu -3'
miRNA:   3'- -CCU--UUGGGuUCCCaGUGCGCCCgUUg -5'
5406 5' -55 NC_001798.1 + 106193 0.71 0.697059
Target:  5'- cGGAGAUCUuuugcgggacgagccGGGUCACGCGGcugacgcGCAGCg -3'
miRNA:   3'- -CCUUUGGGuu-------------CCCAGUGCGCC-------CGUUG- -5'
5406 5' -55 NC_001798.1 + 150621 0.71 0.701097
Target:  5'- gGGggGCUCcuGGGcCGCGCGGGg--- -3'
miRNA:   3'- -CCuuUGGGuuCCCaGUGCGCCCguug -5'
5406 5' -55 NC_001798.1 + 9120 0.71 0.701097
Target:  5'- gGGGAGCCgccgCGAGGuGgucugcggCACGCGGGCGcgGCg -3'
miRNA:   3'- -CCUUUGG----GUUCC-Ca-------GUGCGCCCGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.