miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 5' -55 NC_001798.1 + 135241 0.83 0.187627
Target:  5'- cGGAAGCCCGGGGG-CGgGCGGGCc-- -3'
miRNA:   3'- -CCUUUGGGUUCCCaGUgCGCCCGuug -5'
5406 5' -55 NC_001798.1 + 145381 0.82 0.207341
Target:  5'- uGGGAACCCGAGGGgcgACGCGGGgaaAGCg -3'
miRNA:   3'- -CCUUUGGGUUCCCag-UGCGCCCg--UUG- -5'
5406 5' -55 NC_001798.1 + 152800 0.81 0.234474
Target:  5'- cGGAAcCCCGAGGGaguaaUUACGCGGGgAGCg -3'
miRNA:   3'- -CCUUuGGGUUCCC-----AGUGCGCCCgUUG- -5'
5406 5' -55 NC_001798.1 + 39237 0.81 0.234474
Target:  5'- cGGGAGCCCAGGGGcuguUCGCGgCGGGaAACg -3'
miRNA:   3'- -CCUUUGGGUUCCC----AGUGC-GCCCgUUG- -5'
5406 5' -55 NC_001798.1 + 15437 0.78 0.336894
Target:  5'- uGggGCCCcggagucguggggcgGGGGGUCGCGUGGGUAGa -3'
miRNA:   3'- cCuuUGGG---------------UUCCCAGUGCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 145780 0.78 0.349229
Target:  5'- ---cACCCcGGGGUCcacacaggagcGCGCGGGCGGCa -3'
miRNA:   3'- ccuuUGGGuUCCCAG-----------UGCGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 27016 0.78 0.364292
Target:  5'- cGGGggUCgggcgggCGGGGGUCGgGCGGGCGGCa -3'
miRNA:   3'- -CCUuuGG-------GUUCCCAGUgCGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 42210 0.76 0.433365
Target:  5'- uGGAAGCgCCGcGGGUCGgcgUGCGcGGCGACg -3'
miRNA:   3'- -CCUUUG-GGUuCCCAGU---GCGC-CCGUUG- -5'
5406 5' -55 NC_001798.1 + 150845 0.75 0.479616
Target:  5'- aGGggGCgCCGGucGGGUCGCGgCGGGCu-- -3'
miRNA:   3'- -CCuuUG-GGUU--CCCAGUGC-GCCCGuug -5'
5406 5' -55 NC_001798.1 + 106071 0.75 0.489156
Target:  5'- gGGggGCCUuuGcGGUCugGCGGucGCGGCg -3'
miRNA:   3'- -CCuuUGGGuuC-CCAGugCGCC--CGUUG- -5'
5406 5' -55 NC_001798.1 + 26798 0.75 0.489156
Target:  5'- uGGuuuAUUCGGGGGUCGgGCGGGCGGg -3'
miRNA:   3'- -CCuu-UGGGUUCCCAGUgCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 122134 0.75 0.508496
Target:  5'- gGGggGCCCccGGG-C-CGCGGGCGAg -3'
miRNA:   3'- -CCuuUGGGuuCCCaGuGCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 36474 0.74 0.558137
Target:  5'- cGGAAGCgCCGggaGGGGgcgccggcgCgACGCGGGCGGCc -3'
miRNA:   3'- -CCUUUG-GGU---UCCCa--------G-UGCGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 147237 0.74 0.558137
Target:  5'- cGGggGCCCcGGGGccccgggcCGCGCcGGCGGCg -3'
miRNA:   3'- -CCuuUGGGuUCCCa-------GUGCGcCCGUUG- -5'
5406 5' -55 NC_001798.1 + 101973 0.74 0.558137
Target:  5'- aGGAGGCCCcGGGGgggCgAUGUGcGGCGGCg -3'
miRNA:   3'- -CCUUUGGGuUCCCa--G-UGCGC-CCGUUG- -5'
5406 5' -55 NC_001798.1 + 21820 0.74 0.568243
Target:  5'- cGGAGCCCGcGGGaUgACGCGGGCcccgGGCa -3'
miRNA:   3'- cCUUUGGGUuCCC-AgUGCGCCCG----UUG- -5'
5406 5' -55 NC_001798.1 + 35421 0.73 0.588584
Target:  5'- cGGggGCCUAAugcggcGGGagGCGUGGGCcGCu -3'
miRNA:   3'- -CCuuUGGGUU------CCCagUGCGCCCGuUG- -5'
5406 5' -55 NC_001798.1 + 5598 0.73 0.598806
Target:  5'- aGGucGCCCcguuGGUC-CGCGGGCGGCu -3'
miRNA:   3'- -CCuuUGGGuuc-CCAGuGCGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 154131 0.73 0.598806
Target:  5'- cGGGGACCCcggcggcGGGaCAUgGCGGGCGGCu -3'
miRNA:   3'- -CCUUUGGGuu-----CCCaGUG-CGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 17227 0.73 0.609053
Target:  5'- cGGccGCCUuucGGGGUCGCGCGGGg--- -3'
miRNA:   3'- -CCuuUGGGu--UCCCAGUGCGCCCguug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.