miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 5' -55 NC_001798.1 + 57 0.66 0.93869
Target:  5'- gGGggGCgCGAaggcGGGcggcggcggCGgGCGGGCGGCa -3'
miRNA:   3'- -CCuuUGgGUU----CCCa--------GUgCGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 2222 0.67 0.905674
Target:  5'- -cGGGCCCGAGGcG-CGCaGCGGGCcgaaGGCg -3'
miRNA:   3'- ccUUUGGGUUCC-CaGUG-CGCCCG----UUG- -5'
5406 5' -55 NC_001798.1 + 2473 0.66 0.93869
Target:  5'- cGggGCCCucggcGGGcCG-GCGGGuCAGCg -3'
miRNA:   3'- cCuuUGGGuu---CCCaGUgCGCCC-GUUG- -5'
5406 5' -55 NC_001798.1 + 3467 0.65 0.947777
Target:  5'- aGGAAGCCCuucug-CGCGCGGucGUAGCg -3'
miRNA:   3'- -CCUUUGGGuucccaGUGCGCC--CGUUG- -5'
5406 5' -55 NC_001798.1 + 4079 0.66 0.92812
Target:  5'- cGGucGCCgCGGGGGUCcgggccgGgGCGGGCu-- -3'
miRNA:   3'- -CCuuUGG-GUUCCCAG-------UgCGCCCGuug -5'
5406 5' -55 NC_001798.1 + 4132 0.66 0.93869
Target:  5'- cGGGGcgccGCCCccGGGGcCcuCGCGGGCAc- -3'
miRNA:   3'- -CCUU----UGGGu-UCCCaGu-GCGCCCGUug -5'
5406 5' -55 NC_001798.1 + 4214 0.66 0.928647
Target:  5'- cGgcGCUgGcGGGg-GCGCGGGCGGCg -3'
miRNA:   3'- cCuuUGGgUuCCCagUGCGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 4352 0.67 0.917641
Target:  5'- cGGccGAGCgCCGgcGGGGggCGCGCcGGCGGCg -3'
miRNA:   3'- -CC--UUUG-GGU--UCCCa-GUGCGcCCGUUG- -5'
5406 5' -55 NC_001798.1 + 4411 0.7 0.779099
Target:  5'- cGggGCgCCGGGGGUCGC---GGCGACa -3'
miRNA:   3'- cCuuUG-GGUUCCCAGUGcgcCCGUUG- -5'
5406 5' -55 NC_001798.1 + 4832 0.69 0.815214
Target:  5'- -cGAACCC--GGGcCGCGCggcgGGGCGACg -3'
miRNA:   3'- ccUUUGGGuuCCCaGUGCG----CCCGUUG- -5'
5406 5' -55 NC_001798.1 + 5598 0.73 0.598806
Target:  5'- aGGucGCCCcguuGGUC-CGCGGGCGGCu -3'
miRNA:   3'- -CCuuUGGGuuc-CCAGuGCGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 6219 0.71 0.715152
Target:  5'- cGGuGACCCGGGGGgccggccggggggaCGgGCGGGgGACg -3'
miRNA:   3'- -CCuUUGGGUUCCCa-------------GUgCGCCCgUUG- -5'
5406 5' -55 NC_001798.1 + 6399 0.67 0.917641
Target:  5'- cGGggGgCCGGGGGg-ACG-GGGgGACg -3'
miRNA:   3'- -CCuuUgGGUUCCCagUGCgCCCgUUG- -5'
5406 5' -55 NC_001798.1 + 9120 0.71 0.701097
Target:  5'- gGGGAGCCgccgCGAGGuGgucugcggCACGCGGGCGcgGCg -3'
miRNA:   3'- -CCUUUGG----GUUCC-Ca-------GUGCGCCCGU--UG- -5'
5406 5' -55 NC_001798.1 + 10267 0.69 0.806416
Target:  5'- cGGGGAUaacaCGAGGGugcgUCGgGgGGGCGACg -3'
miRNA:   3'- -CCUUUGg---GUUCCC----AGUgCgCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 11428 0.66 0.943352
Target:  5'- aGGAAacGCCCccGGGGUuguaaaucuggcCGCGgGGGCGc- -3'
miRNA:   3'- -CCUU--UGGGu-UCCCA------------GUGCgCCCGUug -5'
5406 5' -55 NC_001798.1 + 11731 0.69 0.823845
Target:  5'- cGGGGguguauacGCUCGAGGGUCccagGCGCGGGg--- -3'
miRNA:   3'- -CCUU--------UGGGUUCCCAG----UGCGCCCguug -5'
5406 5' -55 NC_001798.1 + 12697 0.67 0.917641
Target:  5'- -cAGGCCC--GGGUUGCuGgGGGCGGCg -3'
miRNA:   3'- ccUUUGGGuuCCCAGUG-CgCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 14959 0.65 0.947777
Target:  5'- uGggGCCCGAGGcauGUCcuuaGCGGG-AGCu -3'
miRNA:   3'- cCuuUGGGUUCC---CAGug--CGCCCgUUG- -5'
5406 5' -55 NC_001798.1 + 15053 0.72 0.680825
Target:  5'- cGGAugGGCCC-GGGG-CGCGCGGGgGGu -3'
miRNA:   3'- -CCU--UUGGGuUCCCaGUGCGCCCgUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.