miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 5' -55 NC_001798.1 + 15437 0.78 0.336894
Target:  5'- uGggGCCCcggagucguggggcgGGGGGUCGCGUGGGUAGa -3'
miRNA:   3'- cCuuUGGG---------------UUCCCAGUGCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 15859 0.66 0.93869
Target:  5'- gGGGucGACCCccucGGGGUCugucCGCaGGGCGc- -3'
miRNA:   3'- -CCU--UUGGGu---UCCCAGu---GCG-CCCGUug -5'
5406 5' -55 NC_001798.1 + 16184 0.73 0.619317
Target:  5'- cGGGGACCgGGGGGaCGCaCGGGCcGCc -3'
miRNA:   3'- -CCUUUGGgUUCCCaGUGcGCCCGuUG- -5'
5406 5' -55 NC_001798.1 + 16597 0.68 0.856535
Target:  5'- aGGAAcgagcgGCCCAGGGGcUCgugacggacgacGCGCcgGGGCAGg -3'
miRNA:   3'- -CCUU------UGGGUUCCC-AG------------UGCG--CCCGUUg -5'
5406 5' -55 NC_001798.1 + 17227 0.73 0.609053
Target:  5'- cGGccGCCUuucGGGGUCGCGCGGGg--- -3'
miRNA:   3'- -CCuuUGGGu--UCCCAGUGCGCCCguug -5'
5406 5' -55 NC_001798.1 + 18255 0.73 0.61829
Target:  5'- cGGggGCCCGGGGGcCAgguacgcauccucCGCGGGgGu- -3'
miRNA:   3'- -CCuuUGGGUUCCCaGU-------------GCGCCCgUug -5'
5406 5' -55 NC_001798.1 + 20908 0.66 0.928647
Target:  5'- -uGAACCCGGGGGUgGgGaugGGGgAGCa -3'
miRNA:   3'- ccUUUGGGUUCCCAgUgCg--CCCgUUG- -5'
5406 5' -55 NC_001798.1 + 21820 0.74 0.568243
Target:  5'- cGGAGCCCGcGGGaUgACGCGGGCcccgGGCa -3'
miRNA:   3'- cCUUUGGGUuCCC-AgUGCGCCCG----UUG- -5'
5406 5' -55 NC_001798.1 + 22149 0.66 0.943352
Target:  5'- cGGggGCCaacGGGa-GCGCGGGgcCGGCa -3'
miRNA:   3'- -CCuuUGGguuCCCagUGCGCCC--GUUG- -5'
5406 5' -55 NC_001798.1 + 22206 0.71 0.721134
Target:  5'- gGGAgcgAGCCCGcccgcgacgAGGGUCucauuagcauCGCGGGCGGa -3'
miRNA:   3'- -CCU---UUGGGU---------UCCCAGu---------GCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 22256 0.66 0.940584
Target:  5'- cGGAAgccGCCCGcgccGGGcgcuaaugagaugcCGCGCGGGCGGa -3'
miRNA:   3'- -CCUU---UGGGUu---CCCa-------------GUGCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 23559 0.73 0.629591
Target:  5'- gGGguGCCCGcgAGGGcCcCGgGGGCGGCg -3'
miRNA:   3'- -CCuuUGGGU--UCCCaGuGCgCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 23883 0.69 0.806416
Target:  5'- gGGgcGCCCGAGgcggaGGagGCGCGGGCc-- -3'
miRNA:   3'- -CCuuUGGGUUC-----CCagUGCGCCCGuug -5'
5406 5' -55 NC_001798.1 + 26354 0.68 0.871681
Target:  5'- cGGcgGCCCGGcGGaGcUGCGCGGGCcGCg -3'
miRNA:   3'- -CCuuUGGGUU-CC-CaGUGCGCCCGuUG- -5'
5406 5' -55 NC_001798.1 + 26798 0.75 0.489156
Target:  5'- uGGuuuAUUCGGGGGUCGgGCGGGCGGg -3'
miRNA:   3'- -CCuu-UGGGUUCCCAGUgCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 26837 0.72 0.669602
Target:  5'- cGGGggUCgggcgggCGGGGGUCGgGCGGGCGGg -3'
miRNA:   3'- -CCUuuGG-------GUUCCCAGUgCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 26882 0.72 0.669602
Target:  5'- cGGGggUCgggcgggCGGGGGUCGgGCGGGCGGg -3'
miRNA:   3'- -CCUuuGG-------GUUCCCAGUgCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 26919 0.7 0.779099
Target:  5'- cGGgcGggCGGGGGUCGgGCGGGCGGg -3'
miRNA:   3'- -CCuuUggGUUCCCAGUgCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 26956 0.72 0.669602
Target:  5'- cGGGggUCgggcgggCGGGGGUCGgGCGGGCGGg -3'
miRNA:   3'- -CCUuuGG-------GUUCCCAGUgCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 27016 0.78 0.364292
Target:  5'- cGGGggUCgggcgggCGGGGGUCGgGCGGGCGGCa -3'
miRNA:   3'- -CCUuuGG-------GUUCCCAGUgCGCCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.