Results 21 - 40 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5406 | 5' | -55 | NC_001798.1 | + | 83268 | 0.66 | 0.928647 |
Target: 5'- cGGGGugCUggGGGUCuuG-GGGUcGCg -3' miRNA: 3'- -CCUUugGGuuCCCAGugCgCCCGuUG- -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 20908 | 0.66 | 0.928647 |
Target: 5'- -uGAACCCGGGGGUgGgGaugGGGgAGCa -3' miRNA: 3'- ccUUUGGGUUCCCAgUgCg--CCCgUUG- -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 148666 | 0.66 | 0.93869 |
Target: 5'- ---uGCCCAccacccccAGGGUCugGCcGGCcaGACg -3' miRNA: 3'- ccuuUGGGU--------UCCCAGugCGcCCG--UUG- -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 2473 | 0.66 | 0.93869 |
Target: 5'- cGggGCCCucggcGGGcCG-GCGGGuCAGCg -3' miRNA: 3'- cCuuUGGGuu---CCCaGUgCGCCC-GUUG- -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 83779 | 0.66 | 0.943352 |
Target: 5'- aGAAGCgCCGGGGGgcccggACGCGGGgcccggaaCAACu -3' miRNA: 3'- cCUUUG-GGUUCCCag----UGCGCCC--------GUUG- -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 74873 | 0.66 | 0.943352 |
Target: 5'- gGGcAGugCCGGuGGGUCGCcacCGGGCGc- -3' miRNA: 3'- -CC-UUugGGUU-CCCAGUGc--GCCCGUug -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 22149 | 0.66 | 0.943352 |
Target: 5'- cGGggGCCaacGGGa-GCGCGGGgcCGGCa -3' miRNA: 3'- -CCuuUGGguuCCCagUGCGCCC--GUUG- -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 11428 | 0.66 | 0.943352 |
Target: 5'- aGGAAacGCCCccGGGGUuguaaaucuggcCGCGgGGGCGc- -3' miRNA: 3'- -CCUU--UGGGu-UCCCA------------GUGCgCCCGUug -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 22256 | 0.66 | 0.940584 |
Target: 5'- cGGAAgccGCCCGcgccGGGcgcuaaugagaugcCGCGCGGGCGGa -3' miRNA: 3'- -CCUU---UGGGUu---CCCa-------------GUGCGCCCGUUg -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 147146 | 0.66 | 0.93869 |
Target: 5'- cGAuuCCCGgccgGGGGUC-C-CGGGUAGCc -3' miRNA: 3'- cCUuuGGGU----UCCCAGuGcGCCCGUUG- -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 154395 | 0.66 | 0.93869 |
Target: 5'- gGGggGCgCGAaggcGGGcggcggcggCGgGCGGGCGGCa -3' miRNA: 3'- -CCuuUGgGUU----CCCa--------GUgCGCCCGUUG- -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 150464 | 0.66 | 0.93869 |
Target: 5'- cGGccGCgCGGGGG-CGCGCGGcGCGc- -3' miRNA: 3'- -CCuuUGgGUUCCCaGUGCGCC-CGUug -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 150200 | 0.66 | 0.93869 |
Target: 5'- gGGggGCggcaCCGGGGGUguuggugcCGCGGGgGACc -3' miRNA: 3'- -CCuuUG----GGUUCCCAgu------GCGCCCgUUG- -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 74028 | 0.66 | 0.93869 |
Target: 5'- uGGAGuACCCGGcGG-CGCGC-GGCGGCc -3' miRNA: 3'- -CCUU-UGGGUUcCCaGUGCGcCCGUUG- -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 4132 | 0.66 | 0.93869 |
Target: 5'- cGGGGcgccGCCCccGGGGcCcuCGCGGGCAc- -3' miRNA: 3'- -CCUU----UGGGu-UCCCaGu-GCGCCCGUug -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 57 | 0.66 | 0.93869 |
Target: 5'- gGGggGCgCGAaggcGGGcggcggcggCGgGCGGGCGGCa -3' miRNA: 3'- -CCuuUGgGUU----CCCa--------GUgCGCCCGUUG- -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 109367 | 0.66 | 0.93869 |
Target: 5'- uGGccGCCCGGGGaG-CA-GCGGGCuGCg -3' miRNA: 3'- -CCuuUGGGUUCC-CaGUgCGCCCGuUG- -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 91022 | 0.66 | 0.93869 |
Target: 5'- aGAAGCCCuccGGGccCACGCGGagGACg -3' miRNA: 3'- cCUUUGGGuu-CCCa-GUGCGCCcgUUG- -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 15859 | 0.66 | 0.93869 |
Target: 5'- gGGGucGACCCccucGGGGUCugucCGCaGGGCGc- -3' miRNA: 3'- -CCU--UUGGGu---UCCCAGu---GCG-CCCGUug -5' |
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5406 | 5' | -55 | NC_001798.1 | + | 69508 | 0.66 | 0.941979 |
Target: 5'- aGGAcGCgCCGgagcGGGGcguggcccgcgagcUCGCGCGGGCu-- -3' miRNA: 3'- -CCUuUG-GGU----UCCC--------------AGUGCGCCCGuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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