miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 5' -55 NC_001798.1 + 154395 0.66 0.93869
Target:  5'- gGGggGCgCGAaggcGGGcggcggcggCGgGCGGGCGGCa -3'
miRNA:   3'- -CCuuUGgGUU----CCCa--------GUgCGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 154131 0.73 0.598806
Target:  5'- cGGGGACCCcggcggcGGGaCAUgGCGGGCGGCu -3'
miRNA:   3'- -CCUUUGGGuu-----CCCaGUG-CGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 152800 0.81 0.234474
Target:  5'- cGGAAcCCCGAGGGaguaaUUACGCGGGgAGCg -3'
miRNA:   3'- -CCUUuGGGUUCCC-----AGUGCGCCCgUUG- -5'
5406 5' -55 NC_001798.1 + 152705 0.68 0.88596
Target:  5'- aGGAAGCCCAGGGGacCAauaG-GGGCc-- -3'
miRNA:   3'- -CCUUUGGGUUCCCa-GUg--CgCCCGuug -5'
5406 5' -55 NC_001798.1 + 152193 0.71 0.728078
Target:  5'- uGAGACCCGGGGGUCGCccucucaccgugccGgGGGUc-- -3'
miRNA:   3'- cCUUUGGGUUCCCAGUG--------------CgCCCGuug -5'
5406 5' -55 NC_001798.1 + 152033 0.69 0.8323
Target:  5'- ---cGCCCccccaGAGGGUCGgG-GGGCGGCg -3'
miRNA:   3'- ccuuUGGG-----UUCCCAGUgCgCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 151219 0.69 0.815214
Target:  5'- aGGGAGCgCGGGGccGUC-CGCGGGUuGCc -3'
miRNA:   3'- -CCUUUGgGUUCC--CAGuGCGCCCGuUG- -5'
5406 5' -55 NC_001798.1 + 150845 0.75 0.479616
Target:  5'- aGGggGCgCCGGucGGGUCGCGgCGGGCu-- -3'
miRNA:   3'- -CCuuUG-GGUU--CCCAGUGC-GCCCGuug -5'
5406 5' -55 NC_001798.1 + 150621 0.71 0.701097
Target:  5'- gGGggGCUCcuGGGcCGCGCGGGg--- -3'
miRNA:   3'- -CCuuUGGGuuCCCaGUGCGCCCguug -5'
5406 5' -55 NC_001798.1 + 150557 0.72 0.660392
Target:  5'- aGGAGagcgGCCCGGGGccCGCG-GGGCGGCg -3'
miRNA:   3'- -CCUU----UGGGUUCCcaGUGCgCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 150464 0.66 0.93869
Target:  5'- cGGccGCgCGGGGG-CGCGCGGcGCGc- -3'
miRNA:   3'- -CCuuUGgGUUCCCaGUGCGCC-CGUug -5'
5406 5' -55 NC_001798.1 + 150200 0.66 0.93869
Target:  5'- gGGggGCggcaCCGGGGGUguuggugcCGCGGGgGACc -3'
miRNA:   3'- -CCuuUG----GGUUCCCAgu------GCGCCCgUUG- -5'
5406 5' -55 NC_001798.1 + 150085 0.7 0.750589
Target:  5'- uGGggGgCgAGGGGcgaGCGCGgGGCGGCg -3'
miRNA:   3'- -CCuuUgGgUUCCCag-UGCGC-CCGUUG- -5'
5406 5' -55 NC_001798.1 + 149967 0.67 0.911777
Target:  5'- cGGAGACgCCGAcGGGg-GCGCGGcGCccGCg -3'
miRNA:   3'- -CCUUUG-GGUU-CCCagUGCGCC-CGu-UG- -5'
5406 5' -55 NC_001798.1 + 148666 0.66 0.93869
Target:  5'- ---uGCCCAccacccccAGGGUCugGCcGGCcaGACg -3'
miRNA:   3'- ccuuUGGGU--------UCCCAGugCGcCCG--UUG- -5'
5406 5' -55 NC_001798.1 + 147237 0.74 0.558137
Target:  5'- cGGggGCCCcGGGGccccgggcCGCGCcGGCGGCg -3'
miRNA:   3'- -CCuuUGGGuUCCCa-------GUGCGcCCGUUG- -5'
5406 5' -55 NC_001798.1 + 147146 0.66 0.93869
Target:  5'- cGAuuCCCGgccgGGGGUC-C-CGGGUAGCc -3'
miRNA:   3'- cCUuuGGGU----UCCCAGuGcGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 146264 0.68 0.874607
Target:  5'- aGGAGACCCAAGcaccgcagccggagaGGcCGagcggggaGUGGGCGGCc -3'
miRNA:   3'- -CCUUUGGGUUC---------------CCaGUg-------CGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 146079 0.65 0.947777
Target:  5'- gGGAGGggUCCGGGGcGaggCGgGCGGGCGAa -3'
miRNA:   3'- -CCUUU--GGGUUCC-Ca--GUgCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 145780 0.78 0.349229
Target:  5'- ---cACCCcGGGGUCcacacaggagcGCGCGGGCGGCa -3'
miRNA:   3'- ccuuUGGGuUCCCAG-----------UGCGCCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.