miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5414 3' -58.9 NC_001798.1 + 100807 0.66 0.824965
Target:  5'- cCGUCUCGgGCGUGUccuccuuuaUG-UCCaaCCCCu -3'
miRNA:   3'- -GUAGAGCgCGCGCG---------ACaAGGagGGGG- -5'
5414 3' -58.9 NC_001798.1 + 7622 0.66 0.816604
Target:  5'- --aCUCGCGgcacCGCGC-GgaCCggCCCCCg -3'
miRNA:   3'- guaGAGCGC----GCGCGaCaaGGa-GGGGG- -5'
5414 3' -58.9 NC_001798.1 + 79428 0.66 0.79941
Target:  5'- gAUCuUCGCGCccucgacgcccGCGCccgGgccucUUCUUCCCCCg -3'
miRNA:   3'- gUAG-AGCGCG-----------CGCGa--C-----AAGGAGGGGG- -5'
5414 3' -58.9 NC_001798.1 + 5495 0.66 0.79941
Target:  5'- --cCUCGuCGCGgGCggGcUCgCUCCCCUg -3'
miRNA:   3'- guaGAGC-GCGCgCGa-CaAG-GAGGGGG- -5'
5414 3' -58.9 NC_001798.1 + 150855 0.66 0.790593
Target:  5'- gGUCgggUCGCgGCGgGCUgggagGUUCCgcgggucgCCCCCg -3'
miRNA:   3'- gUAG---AGCG-CGCgCGA-----CAAGGa-------GGGGG- -5'
5414 3' -58.9 NC_001798.1 + 39480 0.66 0.790593
Target:  5'- --cCUgGCGCGUGCcucGUggCCgcgggCCCCCg -3'
miRNA:   3'- guaGAgCGCGCGCGa--CAa-GGa----GGGGG- -5'
5414 3' -58.9 NC_001798.1 + 118413 0.67 0.77256
Target:  5'- -cUCccCGUGCGUGCUGcugagcCCUgCCCCg -3'
miRNA:   3'- guAGa-GCGCGCGCGACaa----GGAgGGGG- -5'
5414 3' -58.9 NC_001798.1 + 132080 0.67 0.762434
Target:  5'- -uUUUCG-GCGCGCcguugucUGUUUCUCCCgCg -3'
miRNA:   3'- guAGAGCgCGCGCG-------ACAAGGAGGGgG- -5'
5414 3' -58.9 NC_001798.1 + 29300 0.67 0.760578
Target:  5'- --cCUCGCGCGCcgccggguggguggGCUGaUCggCCCCUa -3'
miRNA:   3'- guaGAGCGCGCG--------------CGACaAGgaGGGGG- -5'
5414 3' -58.9 NC_001798.1 + 112118 0.67 0.75405
Target:  5'- aCGUCUCGCucggagcucacguucGgGUuuagcagacacacGCUGUccaggaacaccucgUCCUCCCCCa -3'
miRNA:   3'- -GUAGAGCG---------------CgCG-------------CGACA--------------AGGAGGGGG- -5'
5414 3' -58.9 NC_001798.1 + 28387 0.67 0.75405
Target:  5'- ----aCGCGcCGCGCgggaagGUacgCCUCCCCUc -3'
miRNA:   3'- guagaGCGC-GCGCGa-----CAa--GGAGGGGG- -5'
5414 3' -58.9 NC_001798.1 + 110697 0.67 0.753113
Target:  5'- uGUC-CGcCGUGCGUccgcuaccgccucUGUUCCUUUCCCu -3'
miRNA:   3'- gUAGaGC-GCGCGCG-------------ACAAGGAGGGGG- -5'
5414 3' -58.9 NC_001798.1 + 438 0.67 0.745583
Target:  5'- ----cCGCGCGCcacgggGCUGcggucccgcggccgCCUCCCCCg -3'
miRNA:   3'- guagaGCGCGCG------CGACaa------------GGAGGGGG- -5'
5414 3' -58.9 NC_001798.1 + 124110 0.67 0.73513
Target:  5'- aCAUCgauucCGCcaaCGCGCUGUggCgcgCCCCCg -3'
miRNA:   3'- -GUAGa----GCGc--GCGCGACAagGa--GGGGG- -5'
5414 3' -58.9 NC_001798.1 + 149697 0.67 0.729385
Target:  5'- --cCUCGCGUgGCGCgucUUCCUggcacacuuccucggCCCCCg -3'
miRNA:   3'- guaGAGCGCG-CGCGac-AAGGA---------------GGGGG- -5'
5414 3' -58.9 NC_001798.1 + 148862 0.68 0.686492
Target:  5'- -uUCUCGUGCcCGCccccccUCCUCCUCCu -3'
miRNA:   3'- guAGAGCGCGcGCGaca---AGGAGGGGG- -5'
5414 3' -58.9 NC_001798.1 + 2652 0.68 0.676602
Target:  5'- -cUCUUGCGCuuGCGCg---CCUCCCgCg -3'
miRNA:   3'- guAGAGCGCG--CGCGacaaGGAGGGgG- -5'
5414 3' -58.9 NC_001798.1 + 75950 0.68 0.676602
Target:  5'- gGUCUCGCaGCGCGCcGggCC-CCUgaCCg -3'
miRNA:   3'- gUAGAGCG-CGCGCGaCaaGGaGGG--GG- -5'
5414 3' -58.9 NC_001798.1 + 32261 0.68 0.673627
Target:  5'- gCGUC-CGCGUccgGCGCUGgggagagacgagaaaCCUCCCUCg -3'
miRNA:   3'- -GUAGaGCGCG---CGCGACaa-------------GGAGGGGG- -5'
5414 3' -58.9 NC_001798.1 + 126398 0.68 0.666677
Target:  5'- uCGUCUCGuCGC-CGCUcgUCCcccgaggCCCCCg -3'
miRNA:   3'- -GUAGAGC-GCGcGCGAcaAGGa------GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.