miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5414 3' -58.9 NC_001798.1 + 82381 0.73 0.436026
Target:  5'- gCAUC-CGCGCGCGCUcgGUgccccagCCgCCCCUg -3'
miRNA:   3'- -GUAGaGCGCGCGCGA--CAa------GGaGGGGG- -5'
5414 3' -58.9 NC_001798.1 + 89312 0.75 0.338694
Target:  5'- gGUCUCGCGCGCGacc-UCCUCgcgcucguCCCCg -3'
miRNA:   3'- gUAGAGCGCGCGCgacaAGGAG--------GGGG- -5'
5414 3' -58.9 NC_001798.1 + 100807 0.66 0.824965
Target:  5'- cCGUCUCGgGCGUGUccuccuuuaUG-UCCaaCCCCu -3'
miRNA:   3'- -GUAGAGCgCGCGCG---------ACaAGGagGGGG- -5'
5414 3' -58.9 NC_001798.1 + 109346 0.75 0.324086
Target:  5'- --aCUCGCGCGUGCUGgccggCCUggCCgCCCg -3'
miRNA:   3'- guaGAGCGCGCGCGACaa---GGA--GG-GGG- -5'
5414 3' -58.9 NC_001798.1 + 110697 0.67 0.753113
Target:  5'- uGUC-CGcCGUGCGUccgcuaccgccucUGUUCCUUUCCCu -3'
miRNA:   3'- gUAGaGC-GCGCGCG-------------ACAAGGAGGGGG- -5'
5414 3' -58.9 NC_001798.1 + 112005 0.72 0.481074
Target:  5'- uGUCUCGCGCGCGCacGcgCa--CCCCg -3'
miRNA:   3'- gUAGAGCGCGCGCGa-CaaGgagGGGG- -5'
5414 3' -58.9 NC_001798.1 + 112118 0.67 0.75405
Target:  5'- aCGUCUCGCucggagcucacguucGgGUuuagcagacacacGCUGUccaggaacaccucgUCCUCCCCCa -3'
miRNA:   3'- -GUAGAGCG---------------CgCG-------------CGACA--------------AGGAGGGGG- -5'
5414 3' -58.9 NC_001798.1 + 118413 0.67 0.77256
Target:  5'- -cUCccCGUGCGUGCUGcugagcCCUgCCCCg -3'
miRNA:   3'- guAGa-GCGCGCGCGACaa----GGAgGGGG- -5'
5414 3' -58.9 NC_001798.1 + 121462 0.72 0.462773
Target:  5'- gCGUCcccagcgCGgGCGgGCUGUUCgUCUCCCu -3'
miRNA:   3'- -GUAGa------GCgCGCgCGACAAGgAGGGGG- -5'
5414 3' -58.9 NC_001798.1 + 124110 0.67 0.73513
Target:  5'- aCAUCgauucCGCcaaCGCGCUGUggCgcgCCCCCg -3'
miRNA:   3'- -GUAGa----GCGc--GCGCGACAagGa--GGGGG- -5'
5414 3' -58.9 NC_001798.1 + 126398 0.68 0.666677
Target:  5'- uCGUCUCGuCGC-CGCUcgUCCcccgaggCCCCCg -3'
miRNA:   3'- -GUAGAGC-GCGcGCGAcaAGGa------GGGGG- -5'
5414 3' -58.9 NC_001798.1 + 132080 0.67 0.762434
Target:  5'- -uUUUCG-GCGCGCcguugucUGUUUCUCCCgCg -3'
miRNA:   3'- guAGAGCgCGCGCG-------ACAAGGAGGGgG- -5'
5414 3' -58.9 NC_001798.1 + 137951 0.73 0.410194
Target:  5'- gGUC-CGcCGCGCGCUGcUCCcgcuccagcgCCCCCg -3'
miRNA:   3'- gUAGaGC-GCGCGCGACaAGGa---------GGGGG- -5'
5414 3' -58.9 NC_001798.1 + 148862 0.68 0.686492
Target:  5'- -uUCUCGUGCcCGCccccccUCCUCCUCCu -3'
miRNA:   3'- guAGAGCGCGcGCGaca---AGGAGGGGG- -5'
5414 3' -58.9 NC_001798.1 + 149697 0.67 0.729385
Target:  5'- --cCUCGCGUgGCGCgucUUCCUggcacacuuccucggCCCCCg -3'
miRNA:   3'- guaGAGCGCG-CGCGac-AAGGA---------------GGGGG- -5'
5414 3' -58.9 NC_001798.1 + 150855 0.66 0.790593
Target:  5'- gGUCgggUCGCgGCGgGCUgggagGUUCCgcgggucgCCCCCg -3'
miRNA:   3'- gUAG---AGCG-CGCgCGA-----CAAGGa-------GGGGG- -5'
5414 3' -58.9 NC_001798.1 + 154488 0.69 0.636775
Target:  5'- ----cCGCGgGCGCcGccCCUCCCCCc -3'
miRNA:   3'- guagaGCGCgCGCGaCaaGGAGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.