miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5415 3' -55 NC_001798.1 + 46894 0.65 0.962964
Target:  5'- uGGUgCUGUCCGUU--GGACaaGGAUCg -3'
miRNA:   3'- -CCAgGGCAGGUAGuuCCUGg-CCUAGg -5'
5415 3' -55 NC_001798.1 + 9439 0.66 0.959508
Target:  5'- gGGUCCUG-CCA-CAGGGACCcGucgcgcUCCc -3'
miRNA:   3'- -CCAGGGCaGGUaGUUCCUGGcCu-----AGG- -5'
5415 3' -55 NC_001798.1 + 11645 0.66 0.959508
Target:  5'- cGUCCCuguGUCCccgggggCGGGGGUCGGGUCUc -3'
miRNA:   3'- cCAGGG---CAGGua-----GUUCCUGGCCUAGG- -5'
5415 3' -55 NC_001798.1 + 73242 0.66 0.959508
Target:  5'- cGG-CCCGggggCCccCGGGGACCuGGAggcCCa -3'
miRNA:   3'- -CCaGGGCa---GGuaGUUCCUGG-CCUa--GG- -5'
5415 3' -55 NC_001798.1 + 145634 0.66 0.959508
Target:  5'- cGcCCCGcCCggCAGGGGggccCCGGcgCCg -3'
miRNA:   3'- cCaGGGCaGGuaGUUCCU----GGCCuaGG- -5'
5415 3' -55 NC_001798.1 + 153669 0.66 0.959508
Target:  5'- cGG-CgCGUCCGcgggCGGGGACgCGGGggCCg -3'
miRNA:   3'- -CCaGgGCAGGUa---GUUCCUG-GCCUa-GG- -5'
5415 3' -55 NC_001798.1 + 46661 0.66 0.955836
Target:  5'- ---aCCGagCAUCAcguggggcccGGGGCCGGAUaCCg -3'
miRNA:   3'- ccagGGCagGUAGU----------UCCUGGCCUA-GG- -5'
5415 3' -55 NC_001798.1 + 29096 0.66 0.953527
Target:  5'- cGGUCCCGgccgCCAUCcccgcgcaugguAAuuagcaacuuuuaauGGGCCGGcguUCCc -3'
miRNA:   3'- -CCAGGGCa---GGUAG------------UU---------------CCUGGCCu--AGG- -5'
5415 3' -55 NC_001798.1 + 125307 0.66 0.951944
Target:  5'- --gCCCGcaCCAgcUCGGGGGCCaGGAacUCCa -3'
miRNA:   3'- ccaGGGCa-GGU--AGUUCCUGG-CCU--AGG- -5'
5415 3' -55 NC_001798.1 + 63376 0.66 0.947828
Target:  5'- aGagCUGUCCGUC-GGGGCCugGGAUCg -3'
miRNA:   3'- cCagGGCAGGUAGuUCCUGG--CCUAGg -5'
5415 3' -55 NC_001798.1 + 122298 0.66 0.943485
Target:  5'- uGGUCCUGcgCCAUCAcuacGGGACCa----- -3'
miRNA:   3'- -CCAGGGCa-GGUAGU----UCCUGGccuagg -5'
5415 3' -55 NC_001798.1 + 11696 0.67 0.934112
Target:  5'- uGUCgUUGUCCGUgGAGGGgUGGGUCg -3'
miRNA:   3'- cCAG-GGCAGGUAgUUCCUgGCCUAGg -5'
5415 3' -55 NC_001798.1 + 118904 0.67 0.929077
Target:  5'- cGUCCCGcCCGUCuucGAGGGCCaGGcgaCg -3'
miRNA:   3'- cCAGGGCaGGUAG---UUCCUGG-CCuagG- -5'
5415 3' -55 NC_001798.1 + 65521 0.67 0.91831
Target:  5'- -uUCUCG-CCGUCGAGGuGgCGGAUCa -3'
miRNA:   3'- ccAGGGCaGGUAGUUCC-UgGCCUAGg -5'
5415 3' -55 NC_001798.1 + 21022 0.67 0.91831
Target:  5'- uGUCCCGUCCAcgAAGG--CGGcgCCc -3'
miRNA:   3'- cCAGGGCAGGUagUUCCugGCCuaGG- -5'
5415 3' -55 NC_001798.1 + 48816 0.68 0.911993
Target:  5'- gGGcCCCGgccuuuuUCUGUCGcGGGucCCGGAUCCc -3'
miRNA:   3'- -CCaGGGC-------AGGUAGU-UCCu-GGCCUAGG- -5'
5415 3' -55 NC_001798.1 + 42139 0.68 0.900426
Target:  5'- aGUCCCcGcCCAggcugUgGAGGACgCGGAUCUc -3'
miRNA:   3'- cCAGGG-CaGGU-----AgUUCCUG-GCCUAGG- -5'
5415 3' -55 NC_001798.1 + 59898 0.68 0.900426
Target:  5'- aGUCCUGggacgCCAagcucccggUCGAGGAacCCGGGcUCCg -3'
miRNA:   3'- cCAGGGCa----GGU---------AGUUCCU--GGCCU-AGG- -5'
5415 3' -55 NC_001798.1 + 56406 0.68 0.900426
Target:  5'- gGGUCCCG-CgG-CGGGGGCUGGuggcugCCg -3'
miRNA:   3'- -CCAGGGCaGgUaGUUCCUGGCCua----GG- -5'
5415 3' -55 NC_001798.1 + 42643 0.68 0.894009
Target:  5'- gGGUCgUGUCCAU-GGGGuCCGuGUCCu -3'
miRNA:   3'- -CCAGgGCAGGUAgUUCCuGGCcUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.