Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5415 | 3' | -55 | NC_001798.1 | + | 9439 | 0.66 | 0.959508 |
Target: 5'- gGGUCCUG-CCA-CAGGGACCcGucgcgcUCCc -3' miRNA: 3'- -CCAGGGCaGGUaGUUCCUGGcCu-----AGG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 11645 | 0.66 | 0.959508 |
Target: 5'- cGUCCCuguGUCCccgggggCGGGGGUCGGGUCUc -3' miRNA: 3'- cCAGGG---CAGGua-----GUUCCUGGCCUAGG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 11696 | 0.67 | 0.934112 |
Target: 5'- uGUCgUUGUCCGUgGAGGGgUGGGUCg -3' miRNA: 3'- cCAG-GGCAGGUAgUUCCUgGCCUAGg -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 12790 | 0.68 | 0.88737 |
Target: 5'- cGUCCCGgcgggaUCCucuaaGAGGGCCGaGUCCu -3' miRNA: 3'- cCAGGGC------AGGuag--UUCCUGGCcUAGG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 21022 | 0.67 | 0.91831 |
Target: 5'- uGUCCCGUCCAcgAAGG--CGGcgCCc -3' miRNA: 3'- cCAGGGCAGGUagUUCCugGCCuaGG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 25245 | 0.69 | 0.850975 |
Target: 5'- gGGcCCCGaCCcgCAGGGcgGCUGGcgCCg -3' miRNA: 3'- -CCaGGGCaGGuaGUUCC--UGGCCuaGG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 27924 | 0.69 | 0.873436 |
Target: 5'- gGGUcCCCG-CCGcCGGGGucCCGGcgCCg -3' miRNA: 3'- -CCA-GGGCaGGUaGUUCCu-GGCCuaGG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 29096 | 0.66 | 0.953527 |
Target: 5'- cGGUCCCGgccgCCAUCcccgcgcaugguAAuuagcaacuuuuaauGGGCCGGcguUCCc -3' miRNA: 3'- -CCAGGGCa---GGUAG------------UU---------------CCUGGCCu--AGG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 42139 | 0.68 | 0.900426 |
Target: 5'- aGUCCCcGcCCAggcugUgGAGGACgCGGAUCUc -3' miRNA: 3'- cCAGGG-CaGGU-----AgUUCCUG-GCCUAGG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 42643 | 0.68 | 0.894009 |
Target: 5'- gGGUCgUGUCCAU-GGGGuCCGuGUCCu -3' miRNA: 3'- -CCAGgGCAGGUAgUUCCuGGCcUAGG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 46661 | 0.66 | 0.955836 |
Target: 5'- ---aCCGagCAUCAcguggggcccGGGGCCGGAUaCCg -3' miRNA: 3'- ccagGGCagGUAGU----------UCCUGGCCUA-GG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 46894 | 0.65 | 0.962964 |
Target: 5'- uGGUgCUGUCCGUU--GGACaaGGAUCg -3' miRNA: 3'- -CCAgGGCAGGUAGuuCCUGg-CCUAGg -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 48816 | 0.68 | 0.911993 |
Target: 5'- gGGcCCCGgccuuuuUCUGUCGcGGGucCCGGAUCCc -3' miRNA: 3'- -CCaGGGC-------AGGUAGU-UCCu-GGCCUAGG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 51126 | 0.68 | 0.885335 |
Target: 5'- --cCCCGcgCCGUCGccGGGAggcccgcggucaccCCGGGUCCc -3' miRNA: 3'- ccaGGGCa-GGUAGU--UCCU--------------GGCCUAGG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 56406 | 0.68 | 0.900426 |
Target: 5'- gGGUCCCG-CgG-CGGGGGCUGGuggcugCCg -3' miRNA: 3'- -CCAGGGCaGgUaGUUCCUGGCCua----GG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 59898 | 0.68 | 0.900426 |
Target: 5'- aGUCCUGggacgCCAagcucccggUCGAGGAacCCGGGcUCCg -3' miRNA: 3'- cCAGGGCa----GGU---------AGUUCCU--GGCCU-AGG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 63376 | 0.66 | 0.947828 |
Target: 5'- aGagCUGUCCGUC-GGGGCCugGGAUCg -3' miRNA: 3'- cCagGGCAGGUAGuUCCUGG--CCUAGg -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 64569 | 0.69 | 0.873436 |
Target: 5'- --gCCCGUCCAUCGcguccAGGAgCCGcuUCCc -3' miRNA: 3'- ccaGGGCAGGUAGU-----UCCU-GGCcuAGG- -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 65521 | 0.67 | 0.91831 |
Target: 5'- -uUCUCG-CCGUCGAGGuGgCGGAUCa -3' miRNA: 3'- ccAGGGCaGGUAGUUCC-UgGCCUAGg -5' |
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5415 | 3' | -55 | NC_001798.1 | + | 68570 | 0.68 | 0.88737 |
Target: 5'- aGGcgCCCGaacagCCGcUCGAGGGCCGccUCCa -3' miRNA: 3'- -CCa-GGGCa----GGU-AGUUCCUGGCcuAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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