miRNA display CGI


Results 41 - 60 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5419 3' -68.2 NC_001798.1 + 31676 0.66 0.409181
Target:  5'- cGCGCCGCCCGccgugcCGGuGGACgCGcaccgcgcGCCCc -3'
miRNA:   3'- -CGCGGCGGGCcu----GCC-CCUG-GC--------CGGGc -5'
5419 3' -68.2 NC_001798.1 + 32048 0.66 0.409181
Target:  5'- cCGCuCGcCCCGGcguccGCGGGcGCCGcGCCCc -3'
miRNA:   3'- cGCG-GC-GGGCC-----UGCCCcUGGC-CGGGc -5'
5419 3' -68.2 NC_001798.1 + 57504 0.66 0.408396
Target:  5'- uCGUCGCCUugcgggguuggggGGGCGuGGGugUGGUUCGg -3'
miRNA:   3'- cGCGGCGGG-------------CCUGC-CCCugGCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 21037 0.66 0.406829
Target:  5'- gGCGgCGCCCGGccugcgagaaaGCGcggauguugggaucGGGGCCccguccccccGGCCCGu -3'
miRNA:   3'- -CGCgGCGGGCC-----------UGC--------------CCCUGG----------CCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 54367 0.66 0.401372
Target:  5'- cGCGgCGUCCGGcccACcgGGGGGCCgcGGCgCGg -3'
miRNA:   3'- -CGCgGCGGGCC---UG--CCCCUGG--CCGgGC- -5'
5419 3' -68.2 NC_001798.1 + 133750 0.66 0.401372
Target:  5'- uGCGCgCGCCCGcGugGGGGcGCU-GCuuGc -3'
miRNA:   3'- -CGCG-GCGGGC-CugCCCC-UGGcCGggC- -5'
5419 3' -68.2 NC_001798.1 + 135370 0.66 0.401372
Target:  5'- gGCaGCUGCUCGG-CGGGGucaUGGCCg- -3'
miRNA:   3'- -CG-CGGCGGGCCuGCCCCug-GCCGGgc -5'
5419 3' -68.2 NC_001798.1 + 24667 0.66 0.401372
Target:  5'- gGCgGCCGUgCCGGGgcUGGccGGAgcCCGGCCCGc -3'
miRNA:   3'- -CG-CGGCG-GGCCU--GCC--CCU--GGCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 19972 0.67 0.396733
Target:  5'- -aGCCGCgauagccccgCCGGACGcGGauuccggguucucccGGCCGGCCgGg -3'
miRNA:   3'- cgCGGCG----------GGCCUGC-CC---------------CUGGCCGGgC- -5'
5419 3' -68.2 NC_001798.1 + 4135 0.67 0.393659
Target:  5'- gGCGCCGCCCc--CGGGGcccucGCgGGCaCCc -3'
miRNA:   3'- -CGCGGCGGGccuGCCCC-----UGgCCG-GGc -5'
5419 3' -68.2 NC_001798.1 + 27214 0.67 0.393659
Target:  5'- -aGCC-CCCGGggcggggcGCGGGGGaggCGGCCgCGg -3'
miRNA:   3'- cgCGGcGGGCC--------UGCCCCUg--GCCGG-GC- -5'
5419 3' -68.2 NC_001798.1 + 22286 0.67 0.393659
Target:  5'- aUGCCGCgCGGGCGGaGcGGCggCGGCgCGa -3'
miRNA:   3'- cGCGGCGgGCCUGCC-C-CUG--GCCGgGC- -5'
5419 3' -68.2 NC_001798.1 + 24396 0.67 0.393659
Target:  5'- cCGCCGCCCcguugccgucGGCGGcGGcgucGCCGGCCg- -3'
miRNA:   3'- cGCGGCGGGc---------CUGCC-CC----UGGCCGGgc -5'
5419 3' -68.2 NC_001798.1 + 32352 0.67 0.393659
Target:  5'- cGCGCCaCgCGGAgGGcGGccCCGaGCCCGg -3'
miRNA:   3'- -CGCGGcGgGCCUgCC-CCu-GGC-CGGGC- -5'
5419 3' -68.2 NC_001798.1 + 74726 0.67 0.393659
Target:  5'- uGgGCagcaGCCCuGGA-GGGGACCccGCCCGc -3'
miRNA:   3'- -CgCGg---CGGG-CCUgCCCCUGGc-CGGGC- -5'
5419 3' -68.2 NC_001798.1 + 127939 0.67 0.393659
Target:  5'- gGCGggGcCCCGGGCGaaaaGGcCCGGCCCGc -3'
miRNA:   3'- -CGCggC-GGGCCUGCc---CCuGGCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 150812 0.67 0.389077
Target:  5'- gGCGCCGCCgcugcugcugcuccgCGGGgcgccaGGGGgcGCCGGUCgGg -3'
miRNA:   3'- -CGCGGCGG---------------GCCUg-----CCCC--UGGCCGGgC- -5'
5419 3' -68.2 NC_001798.1 + 40816 0.67 0.389077
Target:  5'- aGCGCCcCCUGGgggccGCugguuccgcguuuuuGGGGGCCGaGCCCc -3'
miRNA:   3'- -CGCGGcGGGCC-----UG---------------CCCCUGGC-CGGGc -5'
5419 3' -68.2 NC_001798.1 + 78311 0.67 0.386042
Target:  5'- cCGCgGCCCGGAaugaccCGGaGGccaccgcggaGCUGGUCCGg -3'
miRNA:   3'- cGCGgCGGGCCU------GCC-CC----------UGGCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 67135 0.67 0.386042
Target:  5'- gGCGCCGCCCcuggcaucGcGACGGGcGCagcacucgUGGCCCc -3'
miRNA:   3'- -CGCGGCGGG--------C-CUGCCCcUG--------GCCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.