miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5419 3' -68.2 NC_001798.1 + 86441 0.83 0.030575
Target:  5'- gGCGCaGCCCggGGACGGGGGCCGGUUCGu -3'
miRNA:   3'- -CGCGgCGGG--CCUGCCCCUGGCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 35532 0.81 0.037296
Target:  5'- cCGCCGCggCCGGcGCGGGGcguuGCCGGCCCGg -3'
miRNA:   3'- cGCGGCG--GGCC-UGCCCC----UGGCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 15828 0.81 0.043268
Target:  5'- gGCGCCGCCCGGuuCGGGG---GGCCCGa -3'
miRNA:   3'- -CGCGGCGGGCCu-GCCCCuggCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 29305 0.8 0.045459
Target:  5'- cGCGCCGCCgGGugGGuGGGCugauCGGCCCc -3'
miRNA:   3'- -CGCGGCGGgCCugCC-CCUG----GCCGGGc -5'
5419 3' -68.2 NC_001798.1 + 83782 0.79 0.057715
Target:  5'- aGCGCCgggggGCCCGGACGcGGGGCCcggaacaacugcacGGCCUGa -3'
miRNA:   3'- -CGCGG-----CGGGCCUGC-CCCUGG--------------CCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 5904 0.78 0.062573
Target:  5'- cCGCCccgaggcggGCCCGGACGGGGGgCGGgCCGu -3'
miRNA:   3'- cGCGG---------CGGGCCUGCCCCUgGCCgGGC- -5'
5419 3' -68.2 NC_001798.1 + 25704 0.78 0.062573
Target:  5'- -gGCCGCCUGGGCGGGcaacugGACCGGCgCCc -3'
miRNA:   3'- cgCGGCGGGCCUGCCC------CUGGCCG-GGc -5'
5419 3' -68.2 NC_001798.1 + 3885 0.78 0.068994
Target:  5'- cGCGCC-CCgGgGGCgGGGGGCCGGCCCc -3'
miRNA:   3'- -CGCGGcGGgC-CUG-CCCCUGGCCGGGc -5'
5419 3' -68.2 NC_001798.1 + 73238 0.77 0.074221
Target:  5'- cCGCCgGCCCGGGggccccCGGGGACCuggaGGCCCa -3'
miRNA:   3'- cGCGG-CGGGCCU------GCCCCUGG----CCGGGc -5'
5419 3' -68.2 NC_001798.1 + 151602 0.77 0.079826
Target:  5'- cUGgCGCUCGGcCGGGGGCCGGgCCGg -3'
miRNA:   3'- cGCgGCGGGCCuGCCCCUGGCCgGGC- -5'
5419 3' -68.2 NC_001798.1 + 25149 0.77 0.081783
Target:  5'- cGCgGCCGCCCcucccGCGGGGGCCGcGCCCc -3'
miRNA:   3'- -CG-CGGCGGGcc---UGCCCCUGGC-CGGGc -5'
5419 3' -68.2 NC_001798.1 + 78817 0.77 0.083786
Target:  5'- aGCGCCGCCCGcGGCGacGGccCCGGCCCc -3'
miRNA:   3'- -CGCGGCGGGC-CUGC--CCcuGGCCGGGc -5'
5419 3' -68.2 NC_001798.1 + 23659 0.77 0.083786
Target:  5'- aGCGCCGCCgGGcccgcgcgGCGGuGGCCGGCCgCGa -3'
miRNA:   3'- -CGCGGCGGgCC--------UGCCcCUGGCCGG-GC- -5'
5419 3' -68.2 NC_001798.1 + 16219 0.76 0.087932
Target:  5'- cGCGCCGCCUguggggGGGCGguGGGGCCggGGCCCu -3'
miRNA:   3'- -CGCGGCGGG------CCUGC--CCCUGG--CCGGGc -5'
5419 3' -68.2 NC_001798.1 + 36568 0.76 0.092273
Target:  5'- cGCGgCGgCCGGGCGGGGGCgcgcggCGGCCgGg -3'
miRNA:   3'- -CGCgGCgGGCCUGCCCCUG------GCCGGgC- -5'
5419 3' -68.2 NC_001798.1 + 36610 0.76 0.092273
Target:  5'- cGCGgCGgCCGGGCGGGGGCgcgcggCGGCCgGg -3'
miRNA:   3'- -CGCgGCgGGCCUGCCCCUG------GCCGGgC- -5'
5419 3' -68.2 NC_001798.1 + 36526 0.76 0.092273
Target:  5'- cGCGgCGgCCGGGCGGGGGCgcgcggCGGCCgGg -3'
miRNA:   3'- -CGCgGCgGGCCUGCCCCUG------GCCGGgC- -5'
5419 3' -68.2 NC_001798.1 + 31851 0.76 0.099168
Target:  5'- gGUGCCGCCCcccacgccgcGGAgGGGGcGgCGGCCCGc -3'
miRNA:   3'- -CGCGGCGGG----------CCUgCCCC-UgGCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 121287 0.76 0.099168
Target:  5'- cGCgGCCGCCCcGACGGuGGGgCGGCCgCGa -3'
miRNA:   3'- -CG-CGGCGGGcCUGCC-CCUgGCCGG-GC- -5'
5419 3' -68.2 NC_001798.1 + 2969 0.75 0.101572
Target:  5'- cGCGUCgGCgUGcGGCGGGGcgGCCGGCCCGc -3'
miRNA:   3'- -CGCGG-CGgGC-CUGCCCC--UGGCCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.