miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5419 3' -68.2 NC_001798.1 + 223 0.72 0.166472
Target:  5'- cGCGcCCGCCCccgcgcggcaGGACGGGGACUagcaGGCUg- -3'
miRNA:   3'- -CGC-GGCGGG----------CCUGCCCCUGG----CCGGgc -5'
5419 3' -68.2 NC_001798.1 + 1218 0.74 0.127005
Target:  5'- cGCGCgGCCCGcggccGacgcccagcguaucuGCGGGGGCgGGCCCGc -3'
miRNA:   3'- -CGCGgCGGGC-----C---------------UGCCCCUGgCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 1494 0.73 0.158591
Target:  5'- gGCGUCGCCCGcgcccgaGGCGGcGGcCCGGCCg- -3'
miRNA:   3'- -CGCGGCGGGC-------CUGCC-CCuGGCCGGgc -5'
5419 3' -68.2 NC_001798.1 + 1968 0.7 0.238765
Target:  5'- cGCGCCcaGCgCCGaGAcguCGGGGGCgCGGUCCa -3'
miRNA:   3'- -CGCGG--CG-GGC-CU---GCCCCUG-GCCGGGc -5'
5419 3' -68.2 NC_001798.1 + 2005 0.7 0.254945
Target:  5'- uGC-CCGCCCaGGCGGccguGGCgGGCCCGc -3'
miRNA:   3'- -CGcGGCGGGcCUGCCc---CUGgCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 2073 0.69 0.286322
Target:  5'- cCGCCGCgcucggcggaccacuCCGGG-GGGGGCCcgcccccggcgcGGCCCGc -3'
miRNA:   3'- cGCGGCG---------------GGCCUgCCCCUGG------------CCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 2258 0.74 0.138225
Target:  5'- cGCGCCGCCgggGGGCGGGGcggcgcagcGCgCGGCCa- -3'
miRNA:   3'- -CGCGGCGGg--CCUGCCCC---------UG-GCCGGgc -5'
5419 3' -68.2 NC_001798.1 + 2458 0.66 0.409181
Target:  5'- -aGCCGCCCugcGGGuCGGGGcccucgGCgGGCCgGc -3'
miRNA:   3'- cgCGGCGGG---CCU-GCCCC------UGgCCGGgC- -5'
5419 3' -68.2 NC_001798.1 + 2529 0.75 0.104031
Target:  5'- gGCGUCGgCgGGGCgGGGGGCgCGGCCCc -3'
miRNA:   3'- -CGCGGCgGgCCUG-CCCCUG-GCCGGGc -5'
5419 3' -68.2 NC_001798.1 + 2618 0.74 0.138225
Target:  5'- gGCGCCGCCCGG-CGGcGccCUGGCCgGg -3'
miRNA:   3'- -CGCGGCGGGCCuGCC-CcuGGCCGGgC- -5'
5419 3' -68.2 NC_001798.1 + 2664 0.69 0.296186
Target:  5'- cGCGCCuCCCGcGGCGcGGaGGCgGGCgCGg -3'
miRNA:   3'- -CGCGGcGGGC-CUGC-CC-CUGgCCGgGC- -5'
5419 3' -68.2 NC_001798.1 + 2811 0.66 0.441342
Target:  5'- aGCGCCggGCCCaGGGCcccGGcGACCaGGCUCa -3'
miRNA:   3'- -CGCGG--CGGG-CCUGc--CC-CUGG-CCGGGc -5'
5419 3' -68.2 NC_001798.1 + 2969 0.75 0.101572
Target:  5'- cGCGUCgGCgUGcGGCGGGGcgGCCGGCCCGc -3'
miRNA:   3'- -CGCGG-CGgGC-CUGCCCC--UGGCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 3000 0.67 0.386042
Target:  5'- cGgGCC-CCgGGcGCGGGGGCgCGGCgggCCGg -3'
miRNA:   3'- -CgCGGcGGgCC-UGCCCCUG-GCCG---GGC- -5'
5419 3' -68.2 NC_001798.1 + 3259 0.67 0.386042
Target:  5'- gGCGCCGUagCCGG-CGGGcACCGcgcGCUCGu -3'
miRNA:   3'- -CGCGGCG--GGCCuGCCCcUGGC---CGGGC- -5'
5419 3' -68.2 NC_001798.1 + 3549 0.72 0.170347
Target:  5'- cCGCCGCCauGGCGuaccccagguGGGGCaCGGCCCGc -3'
miRNA:   3'- cGCGGCGGgcCUGC----------CCCUG-GCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 3757 0.67 0.370366
Target:  5'- cGCGUCGCCCagcucGGGCGcccacacGGGcGCCGgggcGCCCGa -3'
miRNA:   3'- -CGCGGCGGG-----CCUGC-------CCC-UGGC----CGGGC- -5'
5419 3' -68.2 NC_001798.1 + 3885 0.78 0.068994
Target:  5'- cGCGCC-CCgGgGGCgGGGGGCCGGCCCc -3'
miRNA:   3'- -CGCGGcGGgC-CUG-CCCCUGGCCGGGc -5'
5419 3' -68.2 NC_001798.1 + 3998 0.69 0.272015
Target:  5'- gGgGCCGCCCGGcCGuGaAgCGGCCCGu -3'
miRNA:   3'- -CgCGGCGGGCCuGCcCcUgGCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 4082 0.73 0.162676
Target:  5'- uCGCCGCggggguCCGGGCcGGGGCgGGCUCGg -3'
miRNA:   3'- cGCGGCG------GGCCUGcCCCUGgCCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.