Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5419 | 5' | -57.6 | NC_001798.1 | + | 112832 | 0.79 | 0.204695 |
Target: 5'- cGUCAGGgCGUGggugugaauuuCGGggGUUCCGGGCCc -3' miRNA: 3'- -UAGUCCgGCAC-----------GUCaaCAAGGCCCGG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 135149 | 0.74 | 0.375515 |
Target: 5'- cGUCGGGCCGgucuggacggcGCGGUuuUGUuucUCCGGGCUc -3' miRNA: 3'- -UAGUCCGGCa----------CGUCA--ACA---AGGCCCGG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 15268 | 0.73 | 0.426509 |
Target: 5'- -aCGGGCgGUGCcccggGUUCCGGGCg -3' miRNA: 3'- uaGUCCGgCACGucaa-CAAGGCCCGg -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 79299 | 0.7 | 0.620121 |
Target: 5'- --uGGGCgGUGgAGgaGUUCCGGGgCg -3' miRNA: 3'- uagUCCGgCACgUCaaCAAGGCCCgG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 15416 | 0.69 | 0.671027 |
Target: 5'- -gCGGGuCCGggaGgGGUUGUUUgGGGCCc -3' miRNA: 3'- uaGUCC-GGCa--CgUCAACAAGgCCCGG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 28647 | 0.69 | 0.671027 |
Target: 5'- -gCGGGCCGaccGCGaccgGUUCCGGcGCCg -3' miRNA: 3'- uaGUCCGGCa--CGUcaa-CAAGGCC-CGG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 101746 | 0.69 | 0.671027 |
Target: 5'- -cCGGGCCGUGUccacGUUCacguGGGCCg -3' miRNA: 3'- uaGUCCGGCACGucaaCAAGg---CCCGG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 150855 | 0.69 | 0.681147 |
Target: 5'- gGUCGGGUCGcgGCGGgcugggagGUUCCgcGGGUCg -3' miRNA: 3'- -UAGUCCGGCa-CGUCaa------CAAGG--CCCGG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 4079 | 0.69 | 0.691227 |
Target: 5'- ---cGGUCGccGCGGggG-UCCGGGCCg -3' miRNA: 3'- uaguCCGGCa-CGUCaaCaAGGCCCGG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 135314 | 0.68 | 0.711233 |
Target: 5'- -cCGGGCCGUGCuGgaGcgCCuGGuGCCg -3' miRNA: 3'- uaGUCCGGCACGuCaaCaaGG-CC-CGG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 6542 | 0.68 | 0.721139 |
Target: 5'- -aCGGGCCGggggGaCGGggGga-CGGGCCg -3' miRNA: 3'- uaGUCCGGCa---C-GUCaaCaagGCCCGG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 6584 | 0.68 | 0.721139 |
Target: 5'- -aCGGGCCGggggGaCGGggGga-CGGGCCg -3' miRNA: 3'- uaGUCCGGCa---C-GUCaaCaagGCCCGG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 12309 | 0.68 | 0.73097 |
Target: 5'- -cCAGGCCcUGCAGcgagcggCCGGGCa -3' miRNA: 3'- uaGUCCGGcACGUCaacaa--GGCCCGg -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 136594 | 0.68 | 0.73097 |
Target: 5'- -aCAGuCCGUGCGGggGa--CGGGCCc -3' miRNA: 3'- uaGUCcGGCACGUCaaCaagGCCCGG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 57408 | 0.68 | 0.750369 |
Target: 5'- -gCGGGUCGUgGCGGUUGcaucgCaCGGGCUc -3' miRNA: 3'- uaGUCCGGCA-CGUCAACaa---G-GCCCGG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 76862 | 0.68 | 0.750369 |
Target: 5'- uGUCcGGCCGUGCuGgcGacccUgCGGGCCu -3' miRNA: 3'- -UAGuCCGGCACGuCaaCa---AgGCCCGG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 26374 | 0.68 | 0.750369 |
Target: 5'- -gCGGGCCGcgGCGGgaGUUCugcgcgCGGGCg -3' miRNA: 3'- uaGUCCGGCa-CGUCaaCAAG------GCCCGg -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 58471 | 0.67 | 0.759917 |
Target: 5'- uUCGGGCCGUGCGGcc---CCGucGCCg -3' miRNA: 3'- uAGUCCGGCACGUCaacaaGGCc-CGG- -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 146289 | 0.67 | 0.759917 |
Target: 5'- --gAGGCCGaGCGGggagUGggcggCCGGGCg -3' miRNA: 3'- uagUCCGGCaCGUCa---ACaa---GGCCCGg -5' |
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5419 | 5' | -57.6 | NC_001798.1 | + | 153825 | 0.67 | 0.759917 |
Target: 5'- -gCAGGCgcggCGUGCGGggccUCCGGcGCCu -3' miRNA: 3'- uaGUCCG----GCACGUCaacaAGGCC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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