miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5419 5' -57.6 NC_001798.1 + 2797 0.66 0.823118
Target:  5'- -gCGGGCUccGCGGcaGcgCCGGGCCc -3'
miRNA:   3'- uaGUCCGGcaCGUCaaCaaGGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 4079 0.69 0.691227
Target:  5'- ---cGGUCGccGCGGggG-UCCGGGCCg -3'
miRNA:   3'- uaguCCGGCa-CGUCaaCaAGGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 4837 0.67 0.7969
Target:  5'- -cCGGGCCGcGCGGcgGggcgacggUCCGGGUUc -3'
miRNA:   3'- uaGUCCGGCaCGUCaaCa-------AGGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 6369 0.66 0.81454
Target:  5'- -aCGGGCCGggggGCcGggGggCCgggGGGCCg -3'
miRNA:   3'- uaGUCCGGCa---CGuCaaCaaGG---CCCGG- -5'
5419 5' -57.6 NC_001798.1 + 6542 0.68 0.721139
Target:  5'- -aCGGGCCGggggGaCGGggGga-CGGGCCg -3'
miRNA:   3'- uaGUCCGGCa---C-GUCaaCaagGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 6584 0.68 0.721139
Target:  5'- -aCGGGCCGggggGaCGGggGga-CGGGCCg -3'
miRNA:   3'- uaGUCCGGCa---C-GUCaaCaagGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 10712 0.66 0.823118
Target:  5'- -gCAGGCauc-CAGggGUUCCGcGGCCc -3'
miRNA:   3'- uaGUCCGgcacGUCaaCAAGGC-CCGG- -5'
5419 5' -57.6 NC_001798.1 + 12309 0.68 0.73097
Target:  5'- -cCAGGCCcUGCAGcgagcggCCGGGCa -3'
miRNA:   3'- uaGUCCGGcACGUCaacaa--GGCCCGg -5'
5419 5' -57.6 NC_001798.1 + 15268 0.73 0.426509
Target:  5'- -aCGGGCgGUGCcccggGUUCCGGGCg -3'
miRNA:   3'- uaGUCCGgCACGucaa-CAAGGCCCGg -5'
5419 5' -57.6 NC_001798.1 + 15416 0.69 0.671027
Target:  5'- -gCGGGuCCGggaGgGGUUGUUUgGGGCCc -3'
miRNA:   3'- uaGUCC-GGCa--CgUCAACAAGgCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 20337 0.66 0.81454
Target:  5'- -cCAGGUgGcgcagGCGGUUGgcgcugCCGGGCg -3'
miRNA:   3'- uaGUCCGgCa----CGUCAACaa----GGCCCGg -5'
5419 5' -57.6 NC_001798.1 + 24139 0.66 0.847786
Target:  5'- -gCGGGCCGUGCcccaccuggGGUacgccaUGgcggCGGGCCg -3'
miRNA:   3'- uaGUCCGGCACG---------UCA------ACaag-GCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 26374 0.68 0.750369
Target:  5'- -gCGGGCCGcgGCGGgaGUUCugcgcgCGGGCg -3'
miRNA:   3'- uaGUCCGGCa-CGUCaaCAAG------GCCCGg -5'
5419 5' -57.6 NC_001798.1 + 28647 0.69 0.671027
Target:  5'- -gCGGGCCGaccGCGaccgGUUCCGGcGCCg -3'
miRNA:   3'- uaGUCCGGCa--CGUcaa-CAAGGCC-CGG- -5'
5419 5' -57.6 NC_001798.1 + 30765 0.67 0.805798
Target:  5'- --gAGGCCGagGCGGccGUg-CGGGCCg -3'
miRNA:   3'- uagUCCGGCa-CGUCaaCAagGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 30945 0.67 0.769354
Target:  5'- gGUCGGGCgGgggGCGGgcggGggUCGGGCg -3'
miRNA:   3'- -UAGUCCGgCa--CGUCaa--CaaGGCCCGg -5'
5419 5' -57.6 NC_001798.1 + 57408 0.68 0.750369
Target:  5'- -gCGGGUCGUgGCGGUUGcaucgCaCGGGCUc -3'
miRNA:   3'- uaGUCCGGCA-CGUCAACaa---G-GCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 58471 0.67 0.759917
Target:  5'- uUCGGGCCGUGCGGcc---CCGucGCCg -3'
miRNA:   3'- uAGUCCGGCACGUCaacaaGGCc-CGG- -5'
5419 5' -57.6 NC_001798.1 + 63301 0.66 0.831523
Target:  5'- gAUCAGGCCcaGCAGgcGaUCCGcGCUg -3'
miRNA:   3'- -UAGUCCGGcaCGUCaaCaAGGCcCGG- -5'
5419 5' -57.6 NC_001798.1 + 63714 0.67 0.787854
Target:  5'- ---uGGCCGgGUGGUUGauggUgCGGGCCa -3'
miRNA:   3'- uaguCCGGCaCGUCAACa---AgGCCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.