miRNA display CGI


Results 41 - 60 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 3' -60.2 NC_001798.1 + 120514 0.66 0.732183
Target:  5'- uGUUGGCCGUGaacGCCGGguccacguacacguACAgcucGGGGGCCa -3'
miRNA:   3'- -CGGUCGGCGCa--CGGCU--------------UGU----CCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 21723 0.66 0.732183
Target:  5'- cGCgCAGCCgGUGUGCCccuggugcggcggcGAcCGGGAcGCCg -3'
miRNA:   3'- -CG-GUCGG-CGCACGG--------------CUuGUCCUcCGG- -5'
5422 3' -60.2 NC_001798.1 + 24696 0.66 0.725511
Target:  5'- gGCCcGCCGCGcccCCGcGCccGGGGCCc -3'
miRNA:   3'- -CGGuCGGCGCac-GGCuUGucCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 25231 0.66 0.725511
Target:  5'- cGCCGGCCc---GCCGAgggccccgacccGCAGGGcGGCUg -3'
miRNA:   3'- -CGGUCGGcgcaCGGCU------------UGUCCU-CCGG- -5'
5422 3' -60.2 NC_001798.1 + 25340 0.66 0.725511
Target:  5'- cGCgGGCCGUG-GCCGAGCucacGGaCCa -3'
miRNA:   3'- -CGgUCGGCGCaCGGCUUGuccuCC-GG- -5'
5422 3' -60.2 NC_001798.1 + 134914 0.66 0.724555
Target:  5'- uGCCGGCCGCcgccgccGCCGAgucgGCGcgugaccuggugcGGGGcGCCg -3'
miRNA:   3'- -CGGUCGGCGca-----CGGCU----UGU-------------CCUC-CGG- -5'
5422 3' -60.2 NC_001798.1 + 22749 0.66 0.719762
Target:  5'- gGCCgaGGUCGCGaUGgCGGACgAGGAcgggggacgucuccgGGCCg -3'
miRNA:   3'- -CGG--UCGGCGC-ACgGCUUG-UCCU---------------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 122125 0.66 0.715916
Target:  5'- uGCCAGCCGgGgggGCCcc-CGGGccgcGGGCg -3'
miRNA:   3'- -CGGUCGGCgCa--CGGcuuGUCC----UCCGg -5'
5422 3' -60.2 NC_001798.1 + 28078 0.66 0.715916
Target:  5'- cGCCGGCCGCGUccucGCUccuGCGGcgcuGGCUg -3'
miRNA:   3'- -CGGUCGGCGCA----CGGcu-UGUCcu--CCGG- -5'
5422 3' -60.2 NC_001798.1 + 94527 0.66 0.715916
Target:  5'- --gAGCCGCGUGuuGuucGCGGGcgcgAGcGCCa -3'
miRNA:   3'- cggUCGGCGCACggCu--UGUCC----UC-CGG- -5'
5422 3' -60.2 NC_001798.1 + 91559 0.66 0.715916
Target:  5'- aGCCAG-UGUGUGgUGuccGCGGGGGcGCCg -3'
miRNA:   3'- -CGGUCgGCGCACgGCu--UGUCCUC-CGG- -5'
5422 3' -60.2 NC_001798.1 + 24610 0.66 0.715916
Target:  5'- nCUGGCCGCcUGCCGcggGAUccuGGAGGCg -3'
miRNA:   3'- cGGUCGGCGcACGGC---UUGu--CCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 28682 0.67 0.710126
Target:  5'- cGgCGGCCGaggcggucaucggacCGUGCCugGAGCccGAGGCCc -3'
miRNA:   3'- -CgGUCGGC---------------GCACGG--CUUGucCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 111551 0.67 0.710126
Target:  5'- cGCCcggucGCCgGCGUagaacacccaccacaGCUcccuGAGCGGGGGGCCc -3'
miRNA:   3'- -CGGu----CGG-CGCA---------------CGG----CUUGUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 153440 0.67 0.706254
Target:  5'- gGCCAGgCGCGcgGCCGucucccAGGCCa -3'
miRNA:   3'- -CGGUCgGCGCa-CGGCuuguccUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 97520 0.67 0.706254
Target:  5'- gGCC-GCCGCGga--GGAgGGGGGGCg -3'
miRNA:   3'- -CGGuCGGCGCacggCUUgUCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 27177 0.67 0.706254
Target:  5'- aGCUcggGGCCGCGgGCgCGGGgGGaGGGGCg -3'
miRNA:   3'- -CGG---UCGGCGCaCG-GCUUgUC-CUCCGg -5'
5422 3' -60.2 NC_001798.1 + 115052 0.67 0.706254
Target:  5'- cGUgGGCCGCcaccUGCUGGauauGCAGGAGGa- -3'
miRNA:   3'- -CGgUCGGCGc---ACGGCU----UGUCCUCCgg -5'
5422 3' -60.2 NC_001798.1 + 32571 0.67 0.706254
Target:  5'- uGCgGGCCGCG-GCCcccGCGuGGAGccGCCg -3'
miRNA:   3'- -CGgUCGGCGCaCGGcu-UGU-CCUC--CGG- -5'
5422 3' -60.2 NC_001798.1 + 27223 0.67 0.706254
Target:  5'- gGCgGGgCGCGggggaggcgGCCGcGgGGGAGGCg -3'
miRNA:   3'- -CGgUCgGCGCa--------CGGCuUgUCCUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.