miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 3' -60.2 NC_001798.1 + 111233 0.66 0.751017
Target:  5'- cGCCAG-CGCGUcGCgGAACAGcccguucauggcaucGGCCa -3'
miRNA:   3'- -CGGUCgGCGCA-CGgCUUGUCcu-------------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 128493 0.66 0.744466
Target:  5'- cGCCAGCCuGCG-GCUGGACGcccagucgucGGcGGUg -3'
miRNA:   3'- -CGGUCGG-CGCaCGGCUUGU----------CCuCCGg -5'
5422 3' -60.2 NC_001798.1 + 104501 0.66 0.744466
Target:  5'- --uGGCCGCGUGCCaaaAACGcGGcGGCg -3'
miRNA:   3'- cggUCGGCGCACGGc--UUGU-CCuCCGg -5'
5422 3' -60.2 NC_001798.1 + 123576 0.66 0.744466
Target:  5'- aCCgAGCCGCuGUGCC----AGGuGGCCc -3'
miRNA:   3'- cGG-UCGGCG-CACGGcuugUCCuCCGG- -5'
5422 3' -60.2 NC_001798.1 + 13678 0.66 0.744466
Target:  5'- aGCagGGCCGcCGUcCCGAcGCcGGAGGUCa -3'
miRNA:   3'- -CGg-UCGGC-GCAcGGCU-UGuCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 15173 0.66 0.744466
Target:  5'- gGUCcGCCGCGaUGUUcggggGGugGGGGGGCUg -3'
miRNA:   3'- -CGGuCGGCGC-ACGG-----CUugUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 24163 0.66 0.744466
Target:  5'- cGCCauGGCgGCGgGCCGcuuCGGcuGGGGCCu -3'
miRNA:   3'- -CGG--UCGgCGCaCGGCuu-GUC--CUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 73902 0.66 0.744466
Target:  5'- gGCC--CCGCGacgUGCUGucCGcGGAGGCCa -3'
miRNA:   3'- -CGGucGGCGC---ACGGCuuGU-CCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 121285 0.66 0.744466
Target:  5'- uGCgCGGCCGCcccgaCGGugGGGcGGCCg -3'
miRNA:   3'- -CG-GUCGGCGcacg-GCUugUCCuCCGG- -5'
5422 3' -60.2 NC_001798.1 + 131129 0.66 0.744466
Target:  5'- gGCCAGCaggcucuGCGUGUCcaaccgGAGgGGGAcGGCUa -3'
miRNA:   3'- -CGGUCGg------CGCACGG------CUUgUCCU-CCGG- -5'
5422 3' -60.2 NC_001798.1 + 135304 0.66 0.744466
Target:  5'- aGCCcugGGCC-CGgGCCGuGCuGGAGcGCCu -3'
miRNA:   3'- -CGG---UCGGcGCaCGGCuUGuCCUC-CGG- -5'
5422 3' -60.2 NC_001798.1 + 147167 0.66 0.744466
Target:  5'- gGgUAGCCGCccggcGCCGGGCGGaAGGCg -3'
miRNA:   3'- -CgGUCGGCGca---CGGCUUGUCcUCCGg -5'
5422 3' -60.2 NC_001798.1 + 55947 0.66 0.741645
Target:  5'- cGCCgauccaGGCCaCG-GCCgGAACacgagcccgcgccgGGGAGGCCg -3'
miRNA:   3'- -CGG------UCGGcGCaCGG-CUUG--------------UCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 15820 0.66 0.73503
Target:  5'- gGCCAugaggcGCCGC---CCGGuuCGGGGGGCCc -3'
miRNA:   3'- -CGGU------CGGCGcacGGCUu-GUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 15739 0.66 0.73503
Target:  5'- uGCCauGGCgGUG-GCCGAcACAGGgagGGGCg -3'
miRNA:   3'- -CGG--UCGgCGCaCGGCU-UGUCC---UCCGg -5'
5422 3' -60.2 NC_001798.1 + 79367 0.66 0.73503
Target:  5'- cGCCagGGCCgGCG-GCCaGACGGGcgcGGGCg -3'
miRNA:   3'- -CGG--UCGG-CGCaCGGcUUGUCC---UCCGg -5'
5422 3' -60.2 NC_001798.1 + 98798 0.66 0.73503
Target:  5'- cGCCAGCUGCGcGCgCaccuGCGGGAaaucaaGGUCg -3'
miRNA:   3'- -CGGUCGGCGCaCG-Gcu--UGUCCU------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 144060 0.66 0.73503
Target:  5'- cGCCAgGCCGUGcGCCuGGcCGGGAuGGUg -3'
miRNA:   3'- -CGGU-CGGCGCaCGG-CUuGUCCU-CCGg -5'
5422 3' -60.2 NC_001798.1 + 3427 0.66 0.734082
Target:  5'- cGCCAGCaggggcgcguaggCGCGgcgcagGCUGGucaGCAGGAaGCCc -3'
miRNA:   3'- -CGGUCG-------------GCGCa-----CGGCU---UGUCCUcCGG- -5'
5422 3' -60.2 NC_001798.1 + 123402 0.66 0.734082
Target:  5'- gGCCccccgggAGCCGCGgccccGCCGggUcaccGGGGcGCCc -3'
miRNA:   3'- -CGG-------UCGGCGCa----CGGCuuGu---CCUC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.